[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 2,398 items for (author: yao & j)

EMDB-66494:
high affinity IgG1 Fc variant in complex with Fc gamma receptor IIIA 158F
Method: single particle / : Longlong L, Yangyihua Z, Jiannan F, Xiang G, Yaowei M

PDB-9x35:
high affinity IgG1 Fc variant in complex with Fc gamma receptor IIIA 158F
Method: single particle / : Longlong L, Yangyihua Z, Jiannan F, Xiang G, Yaowei M

EMDB-66890:
SARS-CoV-2 Omicron BA.4/5 spike RBD in complex with C092 Fab and ACE2
Method: single particle / : Niu C, Liu B, Gao X, Li Z, He J, Xiong X

EMDB-66891:
SARS-CoV-2 Omicron BA.4/5 spike trimer in complex with C092 Fab and ACE2 (2 RBD up)
Method: single particle / : Niu C, Liu B, Gao X, Li Z, He J, Xiong X

EMDB-66892:
SARS-CoV-2 Omicron BA.4/5 spike trimer in complex with C092 Fab and ACE2 (3 RBD up)
Method: single particle / : Niu C, Liu B, Gao X, Li Z, He J, Xiong X

EMDB-66893:
SARS-CoV-2 Omicron BA.4/5 spike RBD in complex with C092 Fab and ACE2
Method: single particle / : Niu C, Liu B, Gao X, Li Z, He J, Xiong X

EMDB-66894:
SARS-CoV-2 Omicron BA.4/5 spike RBD in complex with C807 Fab and ACE2
Method: single particle / : Niu C, Liu B, Gao X, Li Z, He J, Xiong X

EMDB-66895:
SARS-CoV-2 Omicron BA.4/5 spike trimer in complex with C807 Fab and ACE2 (3 RBD up)
Method: single particle / : Niu C, Liu B, Gao X, Li Z, He J, Xiong X

EMDB-66896:
SARS-CoV-2 Omicron BA.4/5 spike RBD in complex with BD56-104 Fab and ACE2
Method: single particle / : Niu C, Liu B, Gao X, Li Z, He J, Xiong X

EMDB-66897:
SARS-CoV-2 Omicron BA.4/5 spike trimer in complex with BD56-104 Fab and ACE2 (3 RBD up)
Method: single particle / : Niu C, Liu B, Gao X, Li Z, He J, Xiong X

EMDB-66898:
SARS-CoV-2 Omicron BA.4/5 spike RBD in complex with BD56-597 Fab and ACE2
Method: single particle / : Niu C, Liu B, Gao X, Li Z, He J, Xiong X

EMDB-66899:
SARS-CoV-2 Omicron BA.4/5 spike trimer in complex with BD56-597 Fab and ACE2 (3 RBD up)
Method: single particle / : Niu C, Liu B, Gao X, Li Z, He J, Xiong X

EMDB-66900:
Sarbecovirus GX2013 Spike S1 in complex with C092 Fab
Method: single particle / : Niu C, Liu B, Gao X, Li Z, He J, Xiong X

EMDB-66901:
SARS-CoV-2 Omicron LP.8.1 spike trimer (S-6P) in complex with 3 ZL58 Fabs and 3 ZL525 Fabs, focused refinement of RBD and Fab region
Method: single particle / : Niu C, Liu B, Gao X, Li Z, He J, Xiong X

EMDB-66002:
Subtomogram averaging of SARS-CoV-2 spike-P17-IgG Gemini structure
Method: subtomogram averaging / : Song Y, Huang Q, Li S

EMDB-66003:
Subtomogram averaging of SARS-CoV-2 spike-P17-IgG solo structure
Method: subtomogram averaging / : Song Y, Huang Q, Li S

EMDB-66004:
Subtomogram averaging of spike-P17-IgG solo structure on fixed SARS-CoV-2
Method: subtomogram averaging / : Song Y, Huang Q, Li S

EMDB-66005:
Subtomogram averaging of SARS-CoV-2 spike-S309-IgG Gemini structure
Method: subtomogram averaging / : Song Y, Huang Q, Li S

EMDB-66006:
Subtomogram averaging of SARS-CoV-2 spike-S309-IgG solo structure in 1-RBD-up conformation
Method: subtomogram averaging / : Song Y, Huang Q, Li S

EMDB-66007:
Subtomogram averaging of SARS-CoV-2 spike-S309-IgG solo structure in closed conformation
Method: subtomogram averaging / : Song Y, Huang Q, Li S

EMDB-66239:
Subtomogram averaged A/T, P state of the 80S ribosome in rat hippocampal neuron
Method: subtomogram averaging / : Wang X, Chen C, Guo Q

EMDB-66240:
Subtomogram averaged A/T, P, E state of the 80S ribosome in rat hippocampal neuron
Method: subtomogram averaging / : Wang X, Chen C, Guo Q

EMDB-66241:
Subtomogram averaged A/T, P, Z state of the 80S ribosome in rat hippocampal neuron
Method: subtomogram averaging / : Wang X, Chen C, Guo Q

EMDB-66242:
Subtomogram averaged A, P state of the 80S ribosome in rat hippocampal neuron
Method: subtomogram averaging / : Wang X, Chen C, Guo Q

EMDB-66243:
Subtomogram averaged A, P, E state of the 80S ribosome in rat hippocampal neuron
Method: subtomogram averaging / : Wang X, Chen C, Guo Q

EMDB-66244:
Subtomogram averaged A, P, Z state of the 80S ribosome in rat hippocampal neuron
Method: subtomogram averaging / : Wang X, Chen C, Guo Q

EMDB-66245:
Subtomogram averaged P, E state of the 80S ribosome in rat hippocampal neuron
Method: subtomogram averaging / : Wang X, Chen C, Guo Q

EMDB-66246:
Subtomogram averaged P state of the 80S ribosome in rat hippocampal neuron
Method: subtomogram averaging / : Wang X, Chen C, Guo Q

EMDB-66247:
Subtomogram averaged eEF2, E state of the 80S ribosome in rat hippocampal neuron
Method: subtomogram averaging / : Wang X, Chen C, Guo Q

EMDB-66248:
Subtomogram averaged A/P, P/E state of the 80S ribosome in rat hippocampal neuron
Method: subtomogram averaging / : Wang X, Chen C, Guo Q

EMDB-66249:
Subtomogram averaged A/P, P/E, eEF2 state of the 80S ribosome in rat hippocampal neuron
Method: subtomogram averaging / : Wang X, Chen C, Guo Q

EMDB-66250:
Subtomogram averaged A/A, P/E state of the 80S ribosome in rat hippocampal neuron
Method: subtomogram averaging / : Wang X, Chen C, Guo Q

EMDB-66251:
Subtomogram averaged eEF2, eIF5A, SERBP1 state of the 80S ribosome in rat hippocampal neuron
Method: subtomogram averaging / : Wang X, Chen C, Guo Q

EMDB-66252:
Subtomogram averaged Disome 1 state of the 80S ribosome in rat hippocampal neuron
Method: subtomogram averaging / : Wang X, Chen C, Guo Q

EMDB-66253:
Subtomogram averaged Disome 2 state of the 80S ribosome in rat hippocampal neuron
Method: subtomogram averaging / : Wang X, Chen C, Guo Q

EMDB-66254:
Subtomogram averaged Disome 1 state of the 80S ribosome in rat hippocampal neuron
Method: subtomogram averaging / : Wang X, Chen C, Guo Q

EMDB-66255:
in situ idle-1 state of the 80S ribosome in rat hippocampal neuron
Method: single particle / : Wang X, Chen C, Guo Q

EMDB-66256:
in situ idle-2 state of the 80S ribosome in rat hippocampal neuron
Method: single particle / : Wang X, Chen C, Guo Q

EMDB-64071:
CryoEM structure of Brucella melitensis CobS(E142Q) with ATP
Method: single particle / : Zhou YL, Chen X, Liu L

EMDB-64227:
CryoEM structure of Brucella melitensis CobS hexamer without AMPPNP
Method: single particle / : Zhou YL, Chen X, Liu L

EMDB-64228:
CryoEM structure of Brucella melitensis CobS dodecamer 1 without AMPPNP
Method: single particle / : Zhou YL, Chen X, Liu L

EMDB-64229:
CryoEM structure of Brucella melitensis CobS dodecamer 2 without AMPPNP
Method: single particle / : Zhou YL, Chen X, Liu L

EMDB-64231:
CryoEM structure of Brucella melitensis CobN with cobalt ion
Method: single particle / : Zhou YL, Chen X, Liu L

EMDB-64232:
CryoEM structure of Brucella melitensis CobN-CobS-CobT holoenzyme with AMPPNP (conformation 3)
Method: single particle / : Zhou YL, Chen X, Liu L

EMDB-64233:
CryoEM structure of Brucella melitensis CobN-CobS-CobT holoenzyme with AMPPNP (conformation 2)
Method: single particle / : Zhou YL, Chen X, Liu L

EMDB-64234:
CryoEM structure of Brucella melitensis CobN-CobS-CobT holoenzyme with AMPPNP (conformation 1)
Method: single particle / : Zhou YL, Chen X, Liu L

EMDB-64235:
CryoEM structure of Brucella melitensis CobS(E142Q)-CobT complex with ATP (conformation 3)
Method: single particle / : Zhou YL, Chen X, Liu L

EMDB-64236:
CryoEM structure of Brucella melitensis CobS(E142Q)-CobT complex with ATP (conformation 2)
Method: single particle / : Zhou YL, Chen X, Liu L

EMDB-64237:
CryoEM structure of Brucella melitensis CobS(E142Q)-CobT complex with ATP (conformation 1)
Method: single particle / : Zhou YL, Chen X, Liu L

EMDB-64238:
CryoEM structure of Brucella melitensis CobS-CobT complex with AMPPNP (conformation 5)
Method: single particle / : Zhou YL, Chen X, Liu L

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more