[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing all 40 items for (author: ryoya & n)

EMDB-39306:
SpCas9-MMLV RT-pegRNA-target DNA complex (termination) overall map
Method: single particle / : Shuto O, Nakagawa R, Mizuki H, Satoshi NO, Hisato H, Yuzuru I, Nureki O

EMDB-39307:
SpCas9-MMLV RT-pegRNA-target DNA complex (termination) focused map
Method: single particle / : Shuto Y, Nakagawa R, Mizuki H, Satoshi NO, Hisato H, Yuzuru I, Nureki O

EMDB-39308:
SpCas9-MMLV RT-pegRNA-target DNA complex (initiation) overall map
Method: single particle / : Shuto Y, Nakagawa R, Mizuki H, Satoshi NO, Hisato H, Yuzuru I, Nureki O

EMDB-39309:
SpCas9-MMLV RT-pegRNA-target DNA complex (initiation) focused map
Method: single particle / : Shuto Y, Nakagawa R, Mizuki H, Satoshi NO, Hisato H, Yuzuru I, Nureki O

EMDB-39314:
SpCas9-MMLV RT-pegRNA-target DNA complex (elongation 16-nt) overall map
Method: single particle / : Yutaro S, Ryoya N, Mizuki H, Satoshi NO, Hisato H, Yuzuru I, Osamu N

EMDB-39315:
SpCas9-MMLV RT-pegRNA-target DNA complex (elongation 16-nt) focused map
Method: single particle / : Shuto Y, Nakagawa R, Mizuki H, Satoshi NO, Hisato H, Yuzuru I, Nureki O

EMDB-39316:
SpCas9-MMLV RT-pegRNA-target DNA complex (elongation 28-nt) overall map
Method: single particle / : Shuto Y, Nakagawa R, Mizuki H, Satoshi NO, Hisato H, Yuzuru I, Nureki O

EMDB-39317:
SpCas9-MMLV RT-pegRNA-target DNA complex (elongation 28-nt) focused map
Method: single particle / : Shuto Y, Nakagawa R, Mizuki H, Satoshi NO, Hisato H, Yuzuru I, Nureki O

EMDB-37858:
SpCas9-MMLV RT-pegRNA-target DNA complex (termination)
Method: single particle / : Shuto Y, Nakagawa R, Hoki M, Omura SN, Hirano H, Itoh Y, Nureki O

EMDB-37859:
SpCas9-MMLV RT-pegRNA-target DNA complex (initiation)
Method: single particle / : Shuto Y, Nakagawa R, Hoki M, Omura SN, Hirano H, Itoh Y, Nureki O

EMDB-37860:
SpCas9-pegRNA-target DNA complex (pre-initiation)
Method: single particle / : Shuto Y, Nakagawa R, Hoki M, Omura SN, Hirano H, Itoh Y, Nureki O

EMDB-37861:
SpCas9-MMLV RT-pegRNA-target DNA complex (elongation 16-nt)
Method: single particle / : Shuto Y, Nakagawa R, Hoki M, Omura SN, Hirano H, Itoh Y, Nureki O

EMDB-39253:
SpCas9-MMLV RT-pegRNA-target DNA complex (elongation 28-nt)
Method: single particle / : Shuto Y, Nakagawa R, Hoki M, Omura SN, Hirano H, Itoh Y, Nureki O

PDB-8wus:
SpCas9-MMLV RT-pegRNA-target DNA complex (termination)
Method: single particle / : Shuto Y, Nakagawa R, Hoki M, Omura SN, Hirano H, Itoh Y, Nureki O

PDB-8wut:
SpCas9-MMLV RT-pegRNA-target DNA complex (initiation)
Method: single particle / : Shuto Y, Nakagawa R, Hoki M, Omura SN, Hirano H, Itoh Y, Nureki O

PDB-8wuu:
SpCas9-pegRNA-target DNA complex (pre-initiation)
Method: single particle / : Shuto Y, Nakagawa R, Hoki M, Omura SN, Hirano H, Itoh Y, Nureki O

PDB-8wuv:
SpCas9-MMLV RT-pegRNA-target DNA complex (elongation 16-nt)
Method: single particle / : Shuto Y, Nakagawa R, Hoki M, Omura SN, Hirano H, Itoh Y, Nureki O

PDB-8ygj:
SpCas9-MMLV RT-pegRNA-target DNA complex (elongation 28-nt)
Method: single particle / : Shuto Y, Nakagawa R, Hoki M, Omura SN, Hirano H, Itoh Y, Nureki O

EMDB-35912:
Cryo-EM structure of the AsCas12f-sgRNA-target DNA ternary complex
Method: single particle / : Hino T, Omura NS, Nakagawa R, Togashi T, Takeda NS, Hiramoto T, Tasaka S, Hirano H, Tokuyama T, Uosaki H, Ishiguro H, Yamano H, Ozaki Y, Motooka D, Mori H, Kirita Y, Kise Y, Itoh Y, Matoba S, Aburatani H, Yachie N, Siksnys V, Ohmori T, Hoshino A, Nureki O

EMDB-35926:
Cryo-EM structure of the AsCas12f-YHAM-sgRNAS3-5v7-target DNA
Method: single particle / : Hino T, Omura NS, Nakagawa R, Togashi T, Takeda NS, Hiramoto T, Tasaka S, Hirano H, Tokuyama T, Uosaki H, Ishiguro H, Yamano H, Ozaki Y, Motooka D, Mori H, Kirita Y, Kise Y, Itoh Y, Matoba S, Aburatani H, Yachie N, Siksnys V, Ohmori T, Hoshino A, Nureki O

EMDB-35965:
Cryo-EM structure of the AsCas12f-HKRA-sgRNAS3-5v7-target DNA
Method: single particle / : Hino T, Omura NS, Nakagawa R, Togashi T, Takeda NS, Hiramoto T, Tasaka S, Hirano H, Tokuyama T, Uosaki H, Ishiguro H, Yamano H, Ozaki Y, Motooka D, Mori H, Kirita Y, Kise Y, Itoh Y, Matoba S, Aburatani H, Yachie N, Siksnys V, Ohmori T, Hoshino A, Nureki O

PDB-8j12:
Cryo-EM structure of the AsCas12f-sgRNA-target DNA ternary complex
Method: single particle / : Hino T, Omura NS, Nakagawa R, Togashi T, Takeda NS, Hiramoto T, Tasaka S, Hirano H, Tokuyama T, Uosaki H, Ishiguro H, Yamano H, Ozaki Y, Motooka D, Mori H, Kirita Y, Kise Y, Itoh Y, Matoba S, Aburatani H, Yachie N, Siksnys V, Ohmori T, Hoshino A, Nureki O

PDB-8j1j:
Cryo-EM structure of the AsCas12f-YHAM-sgRNAS3-5v7-target DNA
Method: single particle / : Hino T, Omura NS, Nakagawa R, Togashi T, Takeda NS, Hiramoto T, Tasaka S, Hirano H, Tokuyama T, Uosaki H, Ishiguro H, Yamano H, Ozaki Y, Motooka D, Mori H, Kirita Y, Kise Y, Itoh Y, Matoba S, Aburatani H, Yachie N, Siksnys V, Ohmori T, Hoshino A, Nureki O

PDB-8j3r:
Cryo-EM structure of the AsCas12f-HKRA-sgRNAS3-5v7-target DNA
Method: single particle / : Hino T, Omura NS, Nakagawa R, Togashi T, Takeda NS, Hiramoto T, Tasaka S, Hirano H, Tokuyama T, Uosaki H, Ishiguro H, Yamano H, Ozaki Y, Motooka D, Mori H, Kirita Y, Kise Y, Itoh Y, Matoba S, Aburatani H, Yachie N, Siksnys V, Ohmori T, Hoshino A, Nureki O

EMDB-34803:
Cryo-EM structure of the Cas12m2-crRNA-target DNA full R-loop complex
Method: single particle / : Omura NS, Nakagawa R, Wu YW, Sudfeld C, Warren VR, Hirano H, Kusakizako T, Kise Y, Lebbink HGJ, Itoh Y, Oost VDJ, Nureki O

EMDB-34804:
Cryo-EM structure of the Cas12m2-crRNA-target DNA ternary complex intermediate state
Method: single particle / : Omura NS, Nakagawa R, Wu YW, Sudfeld C, Warren VR, Hirano H, Kusakizako T, Kise Y, Lebbink HGJ, Itoh Y, Oost VDJ, Nureki O

EMDB-34824:
Cryo-EM structure of the Cas12m2-crRNA binary complex
Method: single particle / : Omura NS, Nakagawa R, Wu YW, Sudfeld C, Warren VR, Hirano H, Kusakizako T, Kise Y, Lebbink HGJ, Itoh Y, Oost VDJ, Nureki O

PDB-8hhl:
Cryo-EM structure of the Cas12m2-crRNA-target DNA full R-loop complex
Method: single particle / : Omura NS, Nakagawa R, Wu YW, Sudfeld C, Warren VR, Hirano H, Kusakizako T, Kise Y, Lebbink HGJ, Itoh Y, Oost VDJ, Nureki O

PDB-8hhm:
Cryo-EM structure of the Cas12m2-crRNA-target DNA ternary complex intermediate state
Method: single particle / : Omura NS, Nakagawa R, Wu YW, Sudfeld C, Warren VR, Hirano H, Kusakizako T, Kise Y, Lebbink HGJ, Itoh Y, Oost VDJ, Nureki O

PDB-8hio:
Cryo-EM structure of the Cas12m2-crRNA binary complex
Method: single particle / : Omura NS, Nakagawa R, Wu YW, Sudfeld C, Warren VR, Hirano H, Kusakizako T, Kise Y, Lebbink HGJ, Itoh Y, Oost VDJ, Nureki O

EMDB-34428:
Cryo-EM structure of the TnpB-omegaRNA-target DNA ternary complex
Method: single particle / : Nakagawa R, Hirano H, Omura S, Nureki O

PDB-8h1j:
Cryo-EM structure of the TnpB-omegaRNA-target DNA ternary complex
Method: single particle / : Nakagawa R, Hirano H, Omura S, Nureki O

EMDB-32118:
Cryo-EM structure of the Cas13bt3-crRNA-target RNA ternary complex
Method: single particle / : Nakagawa R, Soumya K, Han A, Takeda NS, Tomita A, Hirano H, Kusakizako T, Tomohiro N, Yamashita K, Feng Z, Nishimasu H, Nureki O

PDB-7vtn:
Cryo-EM structure of the Cas13bt3-crRNA-target RNA ternary complex
Method: single particle / : Nakagawa R, Soumya K, Han A, Takeda NS, Tomita A, Hirano H, Kusakizako T, Tomohiro N, Yamashita K, Feng Z, Nishimasu H, Nureki O

EMDB-31807:
Cryo-EM structure of the Cas12c2-sgRNA binary complex
Method: single particle / : Kurihara N, Hirano H, Tomita A, Kobayashi K

EMDB-31808:
Cryo-EM structure of the Cas12c2-sgRNA-target DNA ternary complex
Method: single particle / : Kurihara N, Hirano H, Tomita A, Kobayashi K

PDB-7v93:
Cryo-EM structure of the Cas12c2-sgRNA binary complex
Method: single particle / : Kurihara N, Hirano H, Tomita A, Kobayashi K, Kusakizako T, Nishizawa T, Yamashita K, Nishimasu H, Nureki O

PDB-7v94:
Cryo-EM structure of the Cas12c2-sgRNA-target DNA ternary complex
Method: single particle / : Kurihara N, Hirano H, Tomita A, Kobayashi K, Kusakizako T, Nishizawa T, Yamashita K, Nishimasu H, Nureki O

EMDB-30299:
Cryo-EM structure of the Cas12f1-sgRNA-target DNA complex
Method: single particle / : Takeda NS, Nakagawa R

PDB-7c7l:
Cryo-EM structure of the Cas12f1-sgRNA-target DNA complex
Method: single particle / : Takeda NS, Nakagawa R, Okazaki S, Hirano H, Kobayashi K, Kusakizako T, Nishizawa T, Yamashita K, Nishimasu H, Nureki O

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more