[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 1,664 items for (author: pei & d)

EMDB-64742:
Cryo-EM structure of the histone deacetylase complex Rpd3L in complex with di-nucleosome
Method: single particle / : Zhao H, Li H, Wang C, Yang X, Zou B, Dong S, Zhang N, Zhou Y, Yi L, Zhang Y, Xie Y, Qin D, Chao W, Pei D, He J

PDB-9v2w:
Cryo-EM structure of the histone deacetylase complex Rpd3L in complex with di-nucleosome
Method: single particle / : Zhao H, Li H, Wang C, Yang X, Li H, Zou B, Dong S, Zhang N, Zhou Y, Yi L, Zhang Y, Xie Y, Qin D, Chao W, Pei D, He J

EMDB-54374:
CryoEM structure of transcribing RNA polymerase II elongation complex in post-catalysis state
Method: single particle / : Li Q, Yi G, Zhang P, Wang D

PDB-9ryb:
CryoEM structure of transcribing RNA polymerase II elongation complex in post-catalysis state
Method: single particle / : Li Q, Yi G, Zhang P, Wang D

EMDB-53056:
CryoEM structure of transcribing RNA polymerase II elongation complex_Local density map of RPB4/7
Method: single particle / : Li Q, Yi G, Zhang P, Wang D

EMDB-53057:
CryoEM structure of transcribing RNA polymerase II elongation complex_Composite map
Method: single particle / : Li Q, Yi Q, Zhang P, Wang D

EMDB-53060:
CryoEM structure of transcribing RNA polymerase II elongation complex_Local density map of RPB9
Method: single particle / : Li Q, Yi G, Zhang P, Wang D

EMDB-53062:
CryoEM structure of transcribing RNA polymerase II elongation complex_Local density map of Jaw/RPB9
Method: single particle / : Li Q, Yi G, Zhang P, Wang D

EMDB-53063:
CryoEM structure of transcribing RNA polymerase II elongation complex_Local density map of RPB12/Wall
Method: single particle / : Li Q, Yi G, Zhang P, Wang D

EMDB-53064:
CryoEM structure of transcribing RNA polymerase II elongation complex_3D classification map containing the complete nucleic acid scaffold
Method: single particle / : Li Q, Yi G, Zhang P, Wang D

EMDB-64741:
Cryo-EM structure of the histone deacetylase complex Rpd3L in complex with mono-nucleosome
Method: single particle / : Zhao H, Li H, Wang C, Yang X, Zou B, Dong S, Zhang N, Zhou Y, Yi L, Zhang Y, Xie Y, Qin D, Chao W, Pei D, He J

PDB-9v2v:
Cryo-EM structure of the histone deacetylase complex Rpd3L in complex with mono-nucleosome
Method: single particle / : Zhao H, Li H, Wang C, Yang X, Li H, Zou B, Dong S, Zhang N, Zhou Y, Yi L, Zhang Y, Xie Y, Qin D, Chao W, Pei D, He J

EMDB-64578:
local ARP-NCP structure of the ncBAF-nucleosome complex in the apo state
Method: single particle / : Sun F, Zou B, Li H, Xu C, Luo Q, Wang C, Xu P, Pei D, Chen J, Qin D, Zhang Y, He J

EMDB-64579:
The apo density map of BCL7B-containing ARP module of the human SWI/SNF complex
Method: single particle / : Sun F, Zou B, Li H, Xu C, Luo Q, Wang C, Xu P, Pei D, Chen J, Qin D, Zhang Y, He J

EMDB-64580:
The ADP-bound density map of BCL7B-containing ARP module of the human SWI/SNF complex
Method: single particle / : Sun F, Zou B, Li H, Xu C, Luo Q, Wang C, Xu P, Pei D, Chen J, Qin D, Zhang Y, He J

PDB-9uxa:
local ARP-NCP structure of the ncBAF-nucleosome complex in the apo state
Method: single particle / : Sun F, Zou B, Li H, Xu C, Luo Q, Wang C, Xu P, Pei D, Chen J, Qin D, Zhang Y, He J

PDB-9uxb:
The apo structure of BCL7B-containing ARP module of the human SWI/SNF complex
Method: single particle / : Sun F, Zou B, Li H, Xu C, Luo Q, Wang C, Xu P, Pei D, Chen J, Qin D, Zhang Y, He J

PDB-9uxc:
The ADP-bound structure of BCL7B-containing ARP module of the human SWI/SNF complex
Method: single particle / : Sun F, Zou B, Li H, Xu C, Luo Q, Wang C, Xu P, Pei D, Chen J, Qin D, Zhang Y, He J

EMDB-65442:
Cryo-EM Structure of Nipah Virus Polymerase in complex with ERDRP-0519
Method: single particle / : Xue L, Gui J, Chang T, Pan H, Xiong X

EMDB-65444:
Cryo-EM Structure of Measles Virus Polymerase in complex with ERDRP-0519
Method: single particle / : Xue L, Gui J, Chang T, Pan H, Xiong X

EMDB-65445:
Cryo-EM Structure of Nipah Virus Polymerase in complex with GL22
Method: single particle / : Xue L, Gui J, Chang T, Pan H, Xiong X

EMDB-65446:
Cryo-EM structure of Measles Virus L Protein bound by Phosphoprotein Tetramer
Method: single particle / : Xue L, Gui J, Chang T, Pan H, Xiong X

EMDB-65447:
Cryo-EM Structure of Peste Des Petits Ruminants Virus Polymerase in complex with ERDRP-0519
Method: single particle / : Xue L, Gui J, Chang T, Pan H, Xiong X

EMDB-65448:
Cryo-EM structure of Peste Des Petits Ruminants Virus L Protein bound by Phosphoprotein Tetramer
Method: single particle / : Xue L, Gui J, Chang T, Pan H, Xiong X

EMDB-68072:
Cryo-EM Structure of Nipah Virus Polymerase in complex with G671
Method: single particle / : Xue L, Gui J, Chang T, Pan H, Xiong X

PDB-21xo:
Cryo-EM Structure of Nipah Virus Polymerase in complex with G671
Method: single particle / : Xue L, Gui J, Chang T, Pan H, Xiong X

PDB-9vxv:
Cryo-EM Structure of Nipah Virus Polymerase in complex with ERDRP-0519
Method: single particle / : Xue L, Gui J, Chang T, Pan H, Xiong X

PDB-9vxx:
Cryo-EM Structure of Measles Virus Polymerase in complex with ERDRP-0519
Method: single particle / : Xue L, Gui J, Chang T, Pan H, Xiong X

PDB-9vxy:
Cryo-EM Structure of Nipah Virus Polymerase in complex with GL22
Method: single particle / : Xue L, Gui J, Chang T, Pan H, Xiong X

PDB-9vxz:
Cryo-EM structure of Measles Virus L Protein bound by Phosphoprotein Tetramer
Method: single particle / : Xue L, Gui J, Chang T, Pan H, Xiong X

PDB-9vy0:
Cryo-EM Structure of Peste Des Petits Ruminants Virus Polymerase in complex with ERDRP-0519
Method: single particle / : Xue L, Gui J, Chang T, Pan H, Xiong X

PDB-9vy1:
Cryo-EM structure of Peste Des Petits Ruminants Virus L Protein bound by Phosphoprotein Tetramer
Method: single particle / : Xue L, Gui J, Chang T, Pan H, Xiong X

EMDB-57415:
In-cell structure of H1-bound nucleosome
Method: subtomogram averaging / : Hou Z, Zhang P

EMDB-57416:
In-cell structure of stacking H1-bound nucleosomes
Method: subtomogram averaging / : Hou Z, Zhang P

EMDB-57417:
In-cell structure of core nucleosome
Method: subtomogram averaging / : Hou Z, Zhang P

EMDB-57418:
In-cell structure of open-linker H1-bound nucleosome
Method: subtomogram averaging / : Hou Z, Zhang P

EMDB-47956:
Cryo-EM model of E. coli aspartate transcarbamoylase in the ligand-free T-state
Method: single particle / : Miller RC, Ando N

EMDB-47957:
Cryo-EM model of E. coli aspartate transcarbamoylase in the T-state complexed with CP, CTP, UTP, and Mg2+
Method: single particle / : Miller RC, Ando N

EMDB-47958:
Cryo-EM model of E. coli aspartate transcarbamoylase in the R-state complexed with CP, succinate, CTP, UTP, and Mg2+
Method: single particle / : Miller RC, Ando N

EMDB-47960:
Cryo-EM model of E. coli aspartate transcarbamoylase in the R-state complexed with CP, succinate, CTP, and Mg2+
Method: single particle / : Miller RC, Ando N

EMDB-47961:
Cryo-EM model of E. coli aspartate transcarbamoylase in the R-state complexed with CP and succinate
Method: single particle / : Miller RC, Ando N

EMDB-47963:
Cryo-EM model of E. coli aspartate transcarbamoylase in the R-state complexed with CP, succinate, ATP, and Mg2+
Method: single particle / : Miller RC, Ando N

EMDB-47964:
Cryo-EM model of E. coli aspartate transcarbamoylase in the R-state complexed with CP, succinate, ATP, GTP, and Mg2+
Method: single particle / : Miller RC, Ando N

EMDB-47965:
Cryo-EM model of E. coli aspartate transcarbamoylase in an expanded state complexed with CP, ATP, GTP, and Mg2+
Method: single particle / : Miller RC, Ando N

EMDB-47966:
Cryo-EM model of E. coli aspartate transcarbamoylase in the T-state complexed with CP, ATP, and Mg2+
Method: single particle / : Miller RC, Ando N

PDB-9eek:
Cryo-EM model of E. coli aspartate transcarbamoylase in the ligand-free T-state
Method: single particle / : Patterson MG, Miller RC, Ando N

PDB-9eel:
Cryo-EM model of E. coli aspartate transcarbamoylase in the T-state complexed with CP, CTP, UTP, and Mg2+
Method: single particle / : Miller RC, Ando N

PDB-9eem:
Cryo-EM model of E. coli aspartate transcarbamoylase in the R-state complexed with CP, succinate, CTP, UTP, and Mg2+
Method: single particle / : Patterson MG, Miller RC, Ando N

PDB-9eeo:
Cryo-EM model of E. coli aspartate transcarbamoylase in the R-state complexed with CP, succinate, CTP, and Mg2+
Method: single particle / : Patterson MG, Miller RC, Ando N

PDB-9eep:
Cryo-EM model of E. coli aspartate transcarbamoylase in the R-state complexed with CP and succinate
Method: single particle / : Patterson MG, Miller RC, Ando N

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more