[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 64 items for (author: nishimasu & h)

EMDB-62378:
Cryo-EM structure of the Retron-Eco7 complex (state 1)
Method: single particle / : Ishikawa J, Yoneyama K, Yamashita K, Nishimasu H

EMDB-62379:
Cryo-EM structure of the Retron-Eco7 complex (state 2)
Method: single particle / : Ishikawa J, Yoneyama K, Yamashita K, Nishimasu H

EMDB-62380:
Cryo-EM structure of the Retron-Eco7 complex (state 3)
Method: single particle / : Ishikawa J, Yoneyama K, Yamashita K, Nishimasu H

EMDB-62381:
Cryo-EM structure of the Retron-Eco7 complex (state 4)
Method: single particle / : Ishikawa J, Yoneyama K, Yamashita K, Nishimasu H

EMDB-62382:
Cryo-EM structure of the Retron-Eco7 complex (state 5)
Method: single particle / : Ishikawa J, Yoneyama K, Yamashita K, Nishimasu H

PDB-9kjx:
Cryo-EM structure of the Retron-Eco7 complex (state 1)
Method: single particle / : Ishikawa J, Yoneyama K, Yamashita K, Nishimasu H

PDB-9kjy:
Cryo-EM structure of the Retron-Eco7 complex (state 2)
Method: single particle / : Ishikawa J, Yoneyama K, Yamashita K, Nishimasu H

PDB-9kjz:
Cryo-EM structure of the Retron-Eco7 complex (state 3)
Method: single particle / : Ishikawa J, Yoneyama K, Yamashita K, Nishimasu H

PDB-9kk1:
Cryo-EM structure of the Retron-Eco7 complex (state 4)
Method: single particle / : Ishikawa J, Yoneyama K, Yamashita K, Nishimasu H

PDB-9kk2:
Cryo-EM structure of the Retron-Eco7 complex (state 5)
Method: single particle / : Ishikawa J, Yoneyama K, Yamashita K, Nishimasu H

EMDB-39941:
Cryo-EM structure of eSaCas9_NNG-guide RNA-target DNA complex in an interrogation state
Method: single particle / : Omura SN, Nakagawa R, Yamashita K, Nishimasu H, Nureki O

EMDB-39942:
Cryo-EM structure of eSaCas9_NNG-guide RNA-target DNA complex in an interrogation state
Method: single particle / : Omura SN, Nakagawa R, Yamashita K, Nishimasu H, Nureki O

EMDB-39944:
Cryo-EM structure of eSaCas9_NNG-guide RNA-target DNA complex in a translocation state
Method: single particle / : Omura SN, Nakagawa R, Yamashita K, Nishimasu H, Nureki O

EMDB-39954:
Cryo-EM structure of eSaCas9_NNG-guide RNA-target DNA complex in a catalytically active state
Method: single particle / : Omura SN, Nakagawa R, Yamashita K, Nishimasu H, Nureki O

PDB-8zcy:
Cryo-EM structure of eSaCas9_NNG-guide RNA-target DNA complex in an interrogation state
Method: single particle / : Omura SN, Nakagawa R, Yamashita K, Nishimasu H, Nureki O

PDB-8zcz:
Cryo-EM structure of eSaCas9_NNG-guide RNA-target DNA complex in an interrogation state
Method: single particle / : Omura SN, Nakagawa R, Yamashita K, Nishimasu H, Nureki O

PDB-8zd0:
Cryo-EM structure of eSaCas9_NNG-guide RNA-target DNA complex in a translocation state
Method: single particle / : Omura SN, Nakagawa R, Yamashita K, Nishimasu H, Nureki O

PDB-8zda:
Cryo-EM structure of eSaCas9_NNG-guide RNA-target DNA complex in a catalytically active state
Method: single particle / : Omura SN, Nakagawa R, Yamashita K, Nishimasu H, Nureki O

EMDB-37486:
Cryo-EM structure of the PspCas13b-crRNA complex
Method: single particle / : Ishikawa J, Kato K, Yamashita K, Nishizawa T, Nishimasu H

EMDB-37487:
Cryo-EM structure of the PspCas13b-crRNA-target RNA complex (State 1)
Method: single particle / : Ishikawa J, Kato K, Yamashita K, Nishizawa T, Nishimasu H

EMDB-37488:
Cryo-EM structure of the PspCas13b-crRNA-target RNA complex (State 2)
Method: single particle / : Ishikawa J, Kato K, Yamashita K, Nishizawa T, Nishimasu H

EMDB-37489:
Cryo-EM structure of the dPspCas13b-ADAR2-crRNA-target RNA complex
Method: single particle / : Ishikawa J, Kato K, Yamashita K, Nishizawa T, Nishimasu H

PDB-8wf8:
Cryo-EM structure of the PspCas13b-crRNA complex
Method: single particle / : Ishikawa J, Kato K, Yamashita K, Nishizawa T, Nishimasu H

PDB-8wf9:
Cryo-EM structure of the PspCas13b-crRNA-target RNA complex (State 1)
Method: single particle / : Ishikawa J, Kato K, Yamashita K, Nishizawa T, Nishimasu H

PDB-8wfa:
Cryo-EM structure of the PspCas13b-crRNA-target RNA complex (State 2)
Method: single particle / : Ishikawa J, Kato K, Yamashita K, Nishizawa T, Nishimasu H

PDB-8wfb:
Cryo-EM structure of the dPspCas13b-ADAR2-crRNA-target RNA complex
Method: single particle / : Ishikawa J, Kato K, Yamashita K, Nishizawa T, Nishimasu H

EMDB-37827:
Cryo-EM structure of the IS621 recombinase in complex with bridge RNA, donor DNA, and target DNA in the pre-strand exchange state
Method: single particle / : Hiraizumi M, Yamashita K, Nishimasu H

EMDB-37828:
Cryo-EM structure of the IS621 recombinase in complex with bridge RNA, donor DNA, and target DNA in the pre-strand exchange locked state
Method: single particle / : Hiraizumi M, Yamashita K, Nishimasu H

EMDB-37829:
Cryo-EM structure of the IS621 recombinase in complex with bridge RNA, donor DNA, and target DNA in the post-strand exchange state (Holliday junction intermediate)
Method: single particle / : Hiraizumi M, Yamashita K, Nishimasu H

EMDB-37830:
Cryo-EM structure of the IS621 recombinase in complex with bridge RNA, donor DNA, and target DNA in the post-strand exchange state (Holliday junction resolution)
Method: single particle / : Hiraizumi M, Yamashita K, Nishimasu H

PDB-8wt6:
Cryo-EM structure of the IS621 recombinase in complex with bridge RNA, donor DNA, and target DNA in the pre-strand exchange state
Method: single particle / : Hiraizumi M, Yamashita K, Nishimasu H

PDB-8wt7:
Cryo-EM structure of the IS621 recombinase in complex with bridge RNA, donor DNA, and target DNA in the pre-strand exchange locked state
Method: single particle / : Hiraizumi M, Yamashita K, Nishimasu H

PDB-8wt8:
Cryo-EM structure of the IS621 recombinase in complex with bridge RNA, donor DNA, and target DNA in the post-strand exchange state (Holliday junction intermediate)
Method: single particle / : Hiraizumi M, Yamashita K, Nishimasu H

PDB-8wt9:
Cryo-EM structure of the IS621 recombinase in complex with bridge RNA, donor DNA, and target DNA in the post-strand exchange state (Holliday junction resolution)
Method: single particle / : Hiraizumi M, Yamashita K, Nishimasu H

EMDB-33198:
Structure of the OgeuIscB-omega RNA-target DNA complex
Method: single particle / : Kato K, Okazaki O, Isayama Y, Ishikawa J, Nishizawa T, Nishimasu H

PDB-7xht:
Structure of the OgeuIscB-omega RNA-target DNA complex
Method: single particle / : Kato K, Okazaki O, Isayama Y, Ishikawa J, Nishizawa T, Nishimasu H

EMDB-28064:
Cas7-11 in complex with Csx29, focus refined on Cas7-11
Method: single particle / : Demircioglu FE, Wilkinson ME, Strecker J, Li D, Faure G, Macrae RK, Zhang F

EMDB-28065:
Cas7-11 in complex with DR-mismatched target RNA, Csx29 and Csx30
Method: single particle / : Demircioglu FE, Wilkinson ME, Strecker J, Li D, Faure G, Macrae RK, Zhang F

EMDB-28070:
Cas7-11 in complex with Csx29, focus refined on Csx29
Method: single particle / : Demircioglu FE, Wilkinson ME, Strecker J, Li D, Faure G, Macrae RK, Zhang F

EMDB-28071:
Cas7-11 in complex with DR-mismatched target RNA, Csx29 and Csx30, focus refined on Cas7-11 INS domain
Method: single particle / : Demircioglu FE, Wilkinson ME, Strecker J, Li D, Faure G, Macrae RK, Zhang F

EMDB-28072:
Cas7-11 in complex with DR-mismatched target RNA, Csx29 and Csx30, focus refined on Csx29
Method: single particle / : Demircioglu FE, Wilkinson ME, Strecker J, Li D, Faure G, Macrae RK, Zhang F

EMDB-28073:
Cas7-11 in complex with DR-mismatched target RNA, Csx29 and Csx30, focus refined on Csx29 CHAT domain and Csx30
Method: single particle / : Demircioglu FE, Wilkinson ME, Strecker J, Li D, Faure G, Macrae RK, Zhang F

PDB-8eex:
Cas7-11 in complex with Csx29
Method: single particle / : Demircioglu FE, Wilkinson ME, Strecker J, Li D, Faure G, Macrae RK, Zhang F

PDB-8eey:
Cas7-11 in complex with DR-mismatched target RNA, Csx29 and Csx30
Method: single particle / : Demircioglu FE, Wilkinson ME, Strecker J, Li D, Faure G, Macrae RK, Zhang F

EMDB-33695:
Structure of the Cas7-11-Csx29-guide RNA complex
Method: single particle / : Kato K, Okazaki S, Ishikawa J, Isayama Y, Nishizawa T, Nishimasu H

EMDB-33696:
Structure of the Cas7-11-Csx29-guide RNA-target RNA (no PFS) complex
Method: single particle / : Kato K, Okazaki S, Ishikawa J, Isayama Y, Nishizawa T, Nishimasu H

EMDB-34218:
Structure of the Cas7-11-Csx29-guide RNA-target RNA (non-matching PFS) complex
Method: single particle / : Kato K, Okazaki S, Ishikawa J, Isayama Y, Nishizawa T, Nishimasu H

PDB-7y9x:
Structure of the Cas7-11-Csx29-guide RNA complex
Method: single particle / : Kato K, Okazaki S, Ishikawa J, Isayama Y, Nishizawa T, Nishimasu H

PDB-7y9y:
Structure of the Cas7-11-Csx29-guide RNA-target RNA (no PFS) complex
Method: single particle / : Kato K, Okazaki S, Ishikawa J, Isayama Y, Nishizawa T, Nishimasu H

PDB-8gs2:
Structure of the Cas7-11-Csx29-guide RNA-target RNA (non-matching PFS) complex
Method: single particle / : Kato K, Okazaki S, Ishikawa J, Isayama Y, Nishizawa T, Nishimasu H

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more