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Showing all 38 items for (author: nishimasu & h)
![](data/emdb/media/37827/emdbimg.jpg)
EMDB-37827:
Cryo-EM structure of the IS621 recombinase in complex with bridge RNA, donor DNA, and target DNA in the pre-strand exchange state
Method: single particle / : Hiraizumi M, Yamashita K, Nishimasu H
![](data/emdb/media/37828/emdbimg.jpg)
EMDB-37828:
Cryo-EM structure of the IS621 recombinase in complex with bridge RNA, donor DNA, and target DNA in the pre-strand exchange locked state
Method: single particle / : Hiraizumi M, Yamashita K, Nishimasu H
![](data/emdb/media/37829/emdbimg.jpg)
EMDB-37829:
Cryo-EM structure of the IS621 recombinase in complex with bridge RNA, donor DNA, and target DNA in the post-strand exchange state (Holliday junction intermediate)
Method: single particle / : Hiraizumi M, Yamashita K, Nishimasu H
![](data/emdb/media/37830/emdbimg.jpg)
EMDB-37830:
Cryo-EM structure of the IS621 recombinase in complex with bridge RNA, donor DNA, and target DNA in the post-strand exchange state (Holliday junction resolution)
Method: single particle / : Hiraizumi M, Yamashita K, Nishimasu H
![](data/pdb/img/8wt6.jpg)
PDB-8wt6:
Cryo-EM structure of the IS621 recombinase in complex with bridge RNA, donor DNA, and target DNA in the pre-strand exchange state
Method: single particle / : Hiraizumi M, Yamashita K, Nishimasu H
![](data/pdb/img/8wt7.jpg)
PDB-8wt7:
Cryo-EM structure of the IS621 recombinase in complex with bridge RNA, donor DNA, and target DNA in the pre-strand exchange locked state
Method: single particle / : Hiraizumi M, Yamashita K, Nishimasu H
![](data/pdb/img/8wt8.jpg)
PDB-8wt8:
Cryo-EM structure of the IS621 recombinase in complex with bridge RNA, donor DNA, and target DNA in the post-strand exchange state (Holliday junction intermediate)
Method: single particle / : Hiraizumi M, Yamashita K, Nishimasu H
![](data/pdb/img/8wt9.jpg)
PDB-8wt9:
Cryo-EM structure of the IS621 recombinase in complex with bridge RNA, donor DNA, and target DNA in the post-strand exchange state (Holliday junction resolution)
Method: single particle / : Hiraizumi M, Yamashita K, Nishimasu H
![](data/emdb/media/33198/emdbimg.jpg)
EMDB-33198:
Structure of the OgeuIscB-omega RNA-target DNA complex
Method: single particle / : Kato K, Okazaki O, Isayama Y, Ishikawa J, Nishizawa T, Nishimasu H
![](data/pdb/img/7xht.jpg)
PDB-7xht:
Structure of the OgeuIscB-omega RNA-target DNA complex
Method: single particle / : Kato K, Okazaki O, Isayama Y, Ishikawa J, Nishizawa T, Nishimasu H
![](data/emdb/media/28064/emdbimg.jpg)
EMDB-28064:
Cas7-11 in complex with Csx29, focus refined on Cas7-11
Method: single particle / : Demircioglu FE, Wilkinson ME, Strecker J, Li D, Faure G, Macrae RK, Zhang F
![](data/emdb/media/28065/emdbimg.jpg)
EMDB-28065:
Cas7-11 in complex with DR-mismatched target RNA, Csx29 and Csx30
Method: single particle / : Demircioglu FE, Wilkinson ME, Strecker J, Li D, Faure G, Macrae RK, Zhang F
![](data/emdb/media/28070/emdbimg.jpg)
EMDB-28070:
Cas7-11 in complex with Csx29, focus refined on Csx29
Method: single particle / : Demircioglu FE, Wilkinson ME, Strecker J, Li D, Faure G, Macrae RK, Zhang F
![](data/emdb/media/28071/emdbimg.jpg)
EMDB-28071:
Cas7-11 in complex with DR-mismatched target RNA, Csx29 and Csx30, focus refined on Cas7-11 INS domain
Method: single particle / : Demircioglu FE, Wilkinson ME, Strecker J, Li D, Faure G, Macrae RK, Zhang F
![](data/emdb/media/28072/emdbimg.jpg)
EMDB-28072:
Cas7-11 in complex with DR-mismatched target RNA, Csx29 and Csx30, focus refined on Csx29
Method: single particle / : Demircioglu FE, Wilkinson ME, Strecker J, Li D, Faure G, Macrae RK, Zhang F
![](data/emdb/media/28073/emdbimg.jpg)
EMDB-28073:
Cas7-11 in complex with DR-mismatched target RNA, Csx29 and Csx30, focus refined on Csx29 CHAT domain and Csx30
Method: single particle / : Demircioglu FE, Wilkinson ME, Strecker J, Li D, Faure G, Macrae RK, Zhang F
![](data/pdb/img/8eex.jpg)
PDB-8eex:
Cas7-11 in complex with Csx29
Method: single particle / : Demircioglu FE, Wilkinson ME, Strecker J, Li D, Faure G, Macrae RK, Zhang F
![](data/pdb/img/8eey.jpg)
PDB-8eey:
Cas7-11 in complex with DR-mismatched target RNA, Csx29 and Csx30
Method: single particle / : Demircioglu FE, Wilkinson ME, Strecker J, Li D, Faure G, Macrae RK, Zhang F
![](data/emdb/media/33695/emdbimg.jpg)
EMDB-33695:
Structure of the Cas7-11-Csx29-guide RNA complex
Method: single particle / : Kato K, Okazaki S, Ishikawa J, Isayama Y, Nishizawa T, Nishimasu H
![](data/emdb/media/33696/emdbimg.jpg)
EMDB-33696:
Structure of the Cas7-11-Csx29-guide RNA-target RNA (no PFS) complex
Method: single particle / : Kato K, Okazaki S, Ishikawa J, Isayama Y, Nishizawa T, Nishimasu H
![](data/emdb/media/34218/emdbimg.jpg)
EMDB-34218:
Structure of the Cas7-11-Csx29-guide RNA-target RNA (non-matching PFS) complex
Method: single particle / : Kato K, Okazaki S, Ishikawa J, Isayama Y, Nishizawa T, Nishimasu H
![](data/pdb/img/7y9x.jpg)
PDB-7y9x:
Structure of the Cas7-11-Csx29-guide RNA complex
Method: single particle / : Kato K, Okazaki S, Ishikawa J, Isayama Y, Nishizawa T, Nishimasu H
![](data/pdb/img/7y9y.jpg)
PDB-7y9y:
Structure of the Cas7-11-Csx29-guide RNA-target RNA (no PFS) complex
Method: single particle / : Kato K, Okazaki S, Ishikawa J, Isayama Y, Nishizawa T, Nishimasu H
![](data/pdb/img/8gs2.jpg)
PDB-8gs2:
Structure of the Cas7-11-Csx29-guide RNA-target RNA (non-matching PFS) complex
Method: single particle / : Kato K, Okazaki S, Ishikawa J, Isayama Y, Nishizawa T, Nishimasu H
![](data/emdb/media/32118/emdbimg.jpg)
EMDB-32118:
Cryo-EM structure of the Cas13bt3-crRNA-target RNA ternary complex
Method: single particle / : Nakagawa R, Soumya K, Han A, Takeda NS, Tomita A, Hirano H, Kusakizako T, Tomohiro N, Yamashita K, Feng Z, Nishimasu H, Nureki O
![](data/pdb/img/7vtn.jpg)
PDB-7vtn:
Cryo-EM structure of the Cas13bt3-crRNA-target RNA ternary complex
Method: single particle / : Nakagawa R, Soumya K, Han A, Takeda NS, Tomita A, Hirano H, Kusakizako T, Tomohiro N, Yamashita K, Feng Z, Nishimasu H, Nureki O
![](data/emdb/media/32385/emdbimg.jpg)
EMDB-32385:
Structure of Cas7-11 in complex with guide RNA and target RNA
Method: single particle / : Kato K, Okazaki S, Isayama Y, Nishizawa T, Nishimasu H
![](data/pdb/img/7wah.jpg)
PDB-7wah:
Structure of Cas7-11 in complex with guide RNA and target RNA
Method: single particle / : Kato K, Okazaki S, Isayama Y, Nishizawa T, Nishimasu H
![](data/emdb/media/31807/emdbimg.jpg)
EMDB-31807:
Cryo-EM structure of the Cas12c2-sgRNA binary complex
Method: single particle / : Kurihara N, Hirano H, Tomita A, Kobayashi K
![](data/emdb/media/31808/emdbimg.jpg)
EMDB-31808:
Cryo-EM structure of the Cas12c2-sgRNA-target DNA ternary complex
Method: single particle / : Kurihara N, Hirano H, Tomita A, Kobayashi K
![](data/pdb/img/7v93.jpg)
PDB-7v93:
Cryo-EM structure of the Cas12c2-sgRNA binary complex
Method: single particle / : Kurihara N, Hirano H, Tomita A, Kobayashi K, Kusakizako T, Nishizawa T, Yamashita K, Nishimasu H, Nureki O
![](data/pdb/img/7v94.jpg)
PDB-7v94:
Cryo-EM structure of the Cas12c2-sgRNA-target DNA ternary complex
Method: single particle / : Kurihara N, Hirano H, Tomita A, Kobayashi K, Kusakizako T, Nishizawa T, Yamashita K, Nishimasu H, Nureki O
![](data/emdb/media/31741/emdbimg.jpg)
EMDB-31741:
Structure of the Dicer-2-R2D2 heterodimer
Method: single particle / : Yamaguchi S, Nishizawa T, Kusakizako T, Yamashita K, Tomita A, Hirano H, Nishimasu H, Nureki O
![](data/emdb/media/31742/emdbimg.jpg)
EMDB-31742:
Structure of the Dicer-2-R2D2 heterodimer bound to small RNA duplex
Method: single particle / : Yamaguchi S, Nishizawa T, Kusakizako T, Yamashita K, Tomita A, Hirano H, Nishimasu H, Nureki O
![](data/pdb/img/7v6b.jpg)
PDB-7v6b:
Structure of the Dicer-2-R2D2 heterodimer
Method: single particle / : Yamaguchi S, Nishizawa T, Kusakizako T, Yamashita K, Tomita A, Hirano H, Nishimasu H, Nureki O
![](data/pdb/img/7v6c.jpg)
PDB-7v6c:
Structure of the Dicer-2-R2D2 heterodimer bound to small RNA duplex
Method: single particle / : Yamaguchi S, Nishizawa T, Kusakizako T, Yamashita K, Tomita A, Hirano H, Nishimasu H, Nureki O
![](data/emdb/media/30299/snaps2.jpg)
EMDB-30299:
Cryo-EM structure of the Cas12f1-sgRNA-target DNA complex
Method: single particle / : Takeda NS, Nakagawa R
![](data/pdb/media/7c7l/snapsdep.jpg)
PDB-7c7l:
Cryo-EM structure of the Cas12f1-sgRNA-target DNA complex
Method: single particle / : Takeda NS, Nakagawa R, Okazaki S, Hirano H, Kobayashi K, Kusakizako T, Nishizawa T, Yamashita K, Nishimasu H, Nureki O