[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 861 items for (author: matthew & je)

EMDB-75395:
Cryo-EM structure of Rad1-Rad10
Method: single particle / : Rodriguez Gonzalez J, Guarne A

EMDB-75396:
Cryo-EM structure of the Rad1-Rad10-Saw1 complex
Method: single particle / : Rodriguez Gonzalez J, Guarne A

PDB-10qx:
Cryo-EM structure of Rad1-Rad10
Method: single particle / : Rodriguez Gonzalez J, Guarne A

PDB-10qy:
Cryo-EM structure of the Rad1-Rad10-Saw1 complex
Method: single particle / : Rodriguez Gonzalez J, Guarne A

EMDB-55686:
Murine RNF213 bound to maltoheptaose
Method: single particle / : Yip MCJ, Naydenova K, Randow F

EMDB-55687:
Murine RNF213 bound to maltoheptaose (Consensus refinement)
Method: single particle / : Yip MCJ, Naydenova K, Randow F

EMDB-55688:
Murine RNF213 bound to maltoheptaose (Focused refinement of ATPase domain)
Method: single particle / : Yip MCJ, Naydenova K, Randow F

EMDB-55689:
Murine RNF213 bound to maltoheptaose (Focused refinement of stalk)
Method: single particle / : Yip MCJ, Naydenova K, Randow F

EMDB-55690:
Murine RNF213 bound to maltoheptaose (Focused refinement of top of stalk)
Method: single particle / : Yip MCJ, Naydenova K, Randow F

EMDB-55691:
Murine RNF213 bound to maltoheptaose (Focused refinement of CBM20 domain)
Method: single particle / : Yip MCJ, Naydenova K, Randow F

EMDB-55692:
Murine RNF213 bound to maltoheptaose (Focused refinement of E3 module)
Method: single particle / : Yip MCJ, Naydenova K, Randow F

EMDB-55693:
Murine RNF213 bound to maltoheptaose (Focused refinement of E3 shell)
Method: single particle / : Yip MCJ, Naydenova K, Randow F

EMDB-55694:
Murine RNF213
Method: single particle / : Yip MCJ, Naydenova K, Randow F

EMDB-55695:
Murine RNF213 (Consensus refinement)
Method: single particle / : Yip MCJ, Naydenova K, Randow F

EMDB-55696:
Murine RNF213 (Focused refinement of ATPase domain)
Method: single particle / : Yip MCJ, Naydenova K, Randow F

EMDB-55697:
Murine RNF213 (Focused refinement of stalk)
Method: single particle / : Yip MCJ, Naydenova K, Randow F

EMDB-55698:
Murine RNF213 (Focused refinement of top of stalk)
Method: single particle / : Yip MCJ, Naydenova K, Randow F

EMDB-55699:
Murine RNF213 (Focused refinement of CBM20 domain)
Method: single particle / : Yip MCJ, Naydenova K, Randow F

EMDB-55700:
Murine RNF213 (Focused refinement of E3 module)
Method: single particle / : Yip MCJ, Naydenova K, Randow F

EMDB-55701:
Murine RNF213 (Focused refinement of E3 shell)
Method: single particle / : Yip MCJ, Naydenova K, Randow F

EMDB-59437:
Murine RNF213 (Y434A) (Focused refinement of ATPase domain)
Method: single particle / : Yip MCJ, Naydenova K, Randow F

EMDB-59438:
Murine RNF213 (Y434A) (focused refinement of stalk)
Method: single particle / : Yip MCJ, Naydenova K, Randow F

EMDB-59439:
murine RNF213 (Y434A) (focused refinement of top of stalk)
Method: single particle / : Yip MCJ, Naydenova K, Randow F

EMDB-59440:
murine RNF213 (Y434A) (focused refinement of CBM20 domain)
Method: single particle / : Yip MCJ, Naydenova K, Randow F

EMDB-59441:
murine RNF213 (Y434A) (focused refinement of E3)
Method: single particle / : Yip MCJ, Naydenova K, Randow F

EMDB-59442:
murine RNF213 (Y434A) (focused refinement of E3 shell)
Method: single particle / : Yip MCJ, Naydenova K, Randow F

EMDB-59443:
murine RNF213 (Y434A) (consensus refinement)
Method: single particle / : Yip MCJ, Naydenova K, Randow F

EMDB-59444:
Murine RNF213 (Y434A)
Method: single particle / : Yip MCJ, Naydenova K, Randow F

EMDB-59854:
Cryo-electron tomogram of MEF cell containing polyglucosan
Method: electron tomography / : Yip MCJ, Naydenova K, Otten EG, Heatley A, Moe A, Anton L, de los Reyes-Ramirez L, Jolin HE, Langevin F, Wiacek M, Franco C, Bertolotti A, Kukulski W, McKenzie ANJ, Randow F

PDB-33hm:
Murine RNF213 (Y434A)
Method: single particle / : Yip MCJ, Naydenova K, Randow F

PDB-9t8h:
Murine RNF213 bound to maltoheptaose
Method: single particle / : Yip MCJ, Naydenova K, Randow F

PDB-9t8i:
Murine RNF213
Method: single particle / : Yip MCJ, Naydenova K, Randow F

EMDB-71893:
cryoEM structure of drug bound human SLC33A1 transporter
Method: single particle / : Rafiq M, Lander GC

EMDB-73816:
cryoEM structure of human SLC33A1 transporter
Method: single particle / : Rafiq M, Lander GC

PDB-9pvm:
cryoEM structure of drug bound human SLC33A1 transporter
Method: single particle / : Rafiq M, Lander GC

PDB-9z5i:
cryoEM structure of human SLC33A1 transporter
Method: single particle / : Rafiq M, Lander GC

EMDB-48426:
Cryo-EM local map of six VRC35 Fabs bound to influenza H3N2 Victoria 2011 hemagglutinin head
Method: single particle / : Cheng J, Cale EM, Longo N, Sutton MS, Lei H, Huang R, Morton AJ, Lang ZC, Morano NC, Roark RS, Becker JE, Tsybovsky Y, Li N, Zhang B, Du H, Rubin S, Shapiro L, Kanekiyo M, Pierson TC, Doria-Rose NA, Kwong PD, Zhou T

EMDB-48427:
Cryo-EM local map of dimeric VRC35 Fabs bound to N-linked glycans N126, N165, and N246 on influenza H3N2 Victoria 2011 hemagglutinin head
Method: single particle / : Cheng J, Cale EM, Longo N, Sutton MS, Lei H, Huang R, Morton AJ, Lang ZC, Morano NC, Roark RS, Becker JE, Tsybovsky Y, Li N, Zhang B, Du H, Rubin S, Shapiro L, Kanekiyo M, Pierson TC, Doria-Rose NA, Kwong PD, Zhou T

EMDB-49628:
Composite map of three pairs of dimeric VRC36 Fabs bound to HIV-1 BG505.T332N DS-SOSIP.664 Env trimer
Method: single particle / : Cheng J, Cale EM, Longo N, Sutton MS, Lei H, Huang R, Morton AJ, Lang ZC, Morano NC, Roark RS, Becker JE, Tsybovsky Y, Li N, Zhang B, Du H, Rubin S, Shapiro L, Pierson TC, Doria-Rose NA, Zhou T, Kwong PD

EMDB-49633:
Global map of six VRC36 Fabs bound to HIV-1 BG505.T332N DS-SOSIP.664 Env trimer
Method: single particle / : Cheng J, Cale EM, Longo N, Sutton MS, Lei H, Huang R, Morton AJ, Lang ZC, Morano NC, Roark RS, Becker JE, Tsybovsky Y, Li N, Zhang B, Du H, Rubin S, Shapiro L, Pierson TC, Doria-Rose NA, Zhou T, Kwong PD

EMDB-74798:
Cryo-EM local density map of VRC35 Fab bound to N-linked glycans on the SARS-CoV-2 LP.8.1.9 spike protein
Method: single particle / : Cheng J, Longo N, Sutton MS, Lei H, Huang R, Morton AJ, Lang ZC, Morano NC, Roark RS, Becker JE, Tsybovsky Y, Li N, Zhang B, Du H, Rubin S, Shapiro L, Pierson TC, Doria-Rose NA, Kwong PD, Zhou T

EMDB-74801:
Cryo-EM map of VRC35 Fab bound to the SARS-CoV-2 LP.8.1.9 spike protein
Method: single particle / : Cheng J, Longo N, Sutton MS, Lei H, Huang R, Morton AJ, Lang ZC, Morano NC, Roark RS, Becker JE, Tsybovsky Y, Li N, Zhang B, Du H, Rubin S, Shapiro L, Pierson TC, Doria-Rose NA, Kwong PD, Zhou T

EMDB-74843:
Cryo-EM map of VRC35 Fab bound to the Lassa virus glycoprotein complex
Method: single particle / : Cheng J, Longo N, Sutton MS, Lei H, Huang R, Morton AJ, Lang ZC, Morano NC, Roark RS, Becker JE, Tsybovsky Y, Li N, Zhang B, Du H, Rubin S, Shapiro L, Pierson TC, Doria-Rose NA, Kwong PD, Zhou T

EMDB-72968:
6.9 A map of 3 x FBXO42-SKP1 bound to CCDC6-PP2Ac
Method: single particle / : Michaelian N, Azumaya CM, Hsu PL

EMDB-58529:
CryoEM structure of a catalytically inactive CXC Chemokine-degrading protease SpyCEP from Streptococcus pyogenes complexed with an anti-N-terminal monoclonal antibody
Method: single particle / : Lau RJ, Wu GHY, Barritt JD, Huemer CB, Matthews S

EMDB-58555:
CryoEM structure of a catalytically inactive CXC Chemokine-degrading protease SpyCEP from Streptococcus pyogenes complexed with an anti-PA-domain monoclonal antibody
Method: single particle / : Lau RJ, Barritt JD, Wu GHY, Huemer CB, Matthews S

EMDB-76879:
Subtomogram averaging of vancomycin-resistant Enterococcus faecium (delSagA)
Method: subtomogram averaging / : Park D

EMDB-76880:
Subtomogram averaging of vancomycin-resistant Enterococcus faecium (delSagA-complemented)
Method: subtomogram averaging / : Park D

EMDB-76881:
Subtomogram averaging of vancomycin-resistant Enterococcus faecium (vancomycin treated)
Method: subtomogram averaging / : Park D

EMDB-76882:
Subtomogram averaging of vancomycin-resistant Enterococcus faecium (pghi-4 treated)
Method: subtomogram averaging / : Park D

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more