[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 414 items for (author: clarke & r)

EMDB-73814:
Cryo-EM structure of rabbit major vault protein complex
Method: single particle / : Li H, Clarke OB

EMDB-73817:
The structure of vault shell
Method: single particle / : Li H, Clarke OB

EMDB-73819:
Cryo-EM structure of rabbit vault cap
Method: single particle / : Li H, Clarke OB

PDB-9z4w:
Cryo-EM structure of rabbit major vault protein complex
Method: single particle / : Li H, Clarke OB

PDB-9z5n:
Cryo-EM structure of rabbit vault cap
Method: single particle / : Li H, Clarke OB

EMDB-43735:
Structure of a LGR dimer from Caenorhabditis elegans in apo state
Method: single particle / : Gong Z, Hendrickson WA

PDB-8w1z:
Structure of a LGR dimer from Caenorhabditis elegans in apo state
Method: single particle / : Gong Z, Hendrickson WA

EMDB-73821:
HECT domain of NEDD4-2 complex with a targeted nanobody, nb.C11
Method: single particle / : Afriyie E, Clarke OB

PDB-9z5q:
HECT domain of NEDD4-2 complex with a targeted nanobody, nb.C11
Method: single particle / : Afriyie E, Clarke OB

EMDB-48421:
Band 3 OF/IF1
Method: single particle / : Vallese F, Kim K, Clarke OB

EMDB-48422:
Band 3 OF/OF
Method: single particle / : Vallese F, Kim K, Clarke OB

EMDB-48480:
Band 3 IF1/IF2
Method: single particle / : Vallese F, Kim K, Clarke OB

PDB-9mnd:
Band 3 OF/IF1
Method: single particle / : Vallese F, Kim K, Clarke OB

PDB-9mng:
Band 3 OF/OF
Method: single particle / : Vallese F, Kim K, Clarke OB

PDB-9mos:
Band 3 IF1/IF2
Method: single particle / : Vallese F, Kim K, Clarke OB

EMDB-47126:
Cryo-EM map of the human TREX-2.1 complex bound to DDX39B(UAP56)
Method: single particle / : Clarke BP, Xie Y, Ren Y

EMDB-46983:
Cryo-EM structure of the human TREX-2.1 complex (LENG8/PCID2/DSS1) bound to the N-terminal motif of DDX39B(UAP56)
Method: single particle / : Clarke BP, Xie Y, Ren Y

EMDB-46985:
Cryo-EM structure of the human TREX-2.1 complex (LENG8/PCID2/DSS1) bound to DDX39B(UAP56)
Method: single particle / : Clarke BP, Xie Y, Ren Y

PDB-9dlr:
Cryo-EM structure of the human TREX-2.1 complex (LENG8/PCID2/DSS1) bound to the N-terminal motif of DDX39B(UAP56)
Method: single particle / : Clarke BP, Xie Y, Ren Y

PDB-9dlv:
Cryo-EM structure of the human TREX-2.1 complex (LENG8/PCID2/DSS1) bound to DDX39B(UAP56)
Method: single particle / : Clarke BP, Xie Y, Ren Y

EMDB-70610:
Cryo-EM structure of PCMTD1-ELOBC-CUL5-RBX2 (CRL5-PCMTD1)
Method: single particle / : Pang EZ, Zhao B, Flowers C, Oroudjeva E, Winters JB, Pandey V, Sawaya MR, Wohlschlegel W, Loo JA, Rodriguez JA, Clarke SG

EMDB-70612:
Cryo-EM structure of neddylated PCMTD1-ELOBC-CUL5-RBX2 (N8-CRL5-PCMTD1)
Method: single particle / : Pang EZ, Zhao B, Flowers C, Oroudjeva E, Winters JB, Pandey V, Sawaya MR, Wohlschlegel W, Loo JA, Rodriguez JA, Clarke SG

PDB-9oma:
Cryo-EM structure of PCMTD1-ELOBC-CUL5-RBX2 (CRL5-PCMTD1)
Method: single particle / : Pang EZ, Zhao B, Flowers C, Oroudjeva E, Winters JB, Pandey V, Sawaya MR, Wohlschlegel W, Loo JA, Rodriguez JA, Clarke SG

PDB-9omf:
Cryo-EM structure of neddylated PCMTD1-ELOBC-CUL5-RBX2 (N8-CRL5-PCMTD1)
Method: single particle / : Pang EZ, Zhao B, Flowers C, Oroudjeva E, Winters JB, Pandey V, Sawaya MR, Wohlschlegel W, Loo JA, Rodriguez JA, Clarke SG

EMDB-46981:
Cryo-EM map of human TREX-2 complex bound to full-length DDX39B
Method: single particle / : Clarke BP, Xie Y, Ren Y

EMDB-46982:
Cryo-EM structure of human TREX-2 complex bound to DDX39B(UAP56)
Method: single particle / : Clarke BP, Xie Y, Ren Y

PDB-9dlp:
Cryo-EM structure of human TREX-2 complex bound to DDX39B(UAP56)
Method: single particle / : Clarke BP, Xie Y, Ren Y

EMDB-70630:
Consensus map: Cryo-EM structure of PCMTD1-ELOBC-CUL5-RBX2 (CRL5-PCMTD1)
Method: single particle / : Pang EZ, Zhao B, Flowers C, Oroudjeva E, Winters JB, Pandey V, Sawaya MR, Wohlschlegel W, Loo JA, Rodriguez JA, Clarke SG

EMDB-70631:
Focused map of CUL5-RBX2: Cryo-EM structure of PCMTD1-ELOBC-CUL5-RBX2 (CRL5-PCMTD1)
Method: single particle / : Pang EZ, Zhao B, Flowers C, Oroudjeva E, Winters JB, Pandey V, Sawaya MR, Wohlschlegel W, Loo JA, Rodriguez JA, Clarke SG

EMDB-70632:
Focused map of PCMTD1-ELOBC: Cryo-EM structure of PCMTD1-ELOBC-CUL5-RBX2 (CRL5-PCMTD1)
Method: single particle / : Pang EZ, Zhao B, Flowers C, Oroudjeva E, Winters JB, Pandey V, Sawaya MR, Wohlschlegel W, Loo JA, Rodriguez JA, Clarke SG

EMDB-70633:
Focused map of PCMTD1: Cryo-EM structure of PCMTD1-ELOBC-CUL5-RBX2 (CRL5-PCMTD1)
Method: single particle / : Pang EZ, Zhao B, Flowers C, Oroudjeva E, Winters JB, Pandey V, Sawaya MR, Wohlschlegel W, Loo JA, Rodriguez JA, Clarke SG

EMDB-46907:
4 Angstrom structure of the human TRPV3 pentamer
Method: single particle / : Lansky S, Clarke OB, Scheuring S

PDB-9dij:
4 Angstrom structure of the human TRPV3 pentamer
Method: single particle / : Lansky S, Clarke OB, Scheuring S

EMDB-53153:
Pseudomonas aeruginosa polynucleotide phosphorylase in complex with recognition site of RNase E
Method: single particle / : Paris G, Luisi BF

PDB-9qh3:
Pseudomonas aeruginosa polynucleotide phosphorylase in complex with recognition site of RNase E
Method: single particle / : Paris G, Luisi BF

PDB-9i2q:
Wzc-K540M-3YE MgADP C1
Method: single particle / : Liu JW, Yang Y, Naismith JH

PDB-9i2r:
Wzc-K540M-3YE MgADP C8
Method: single particle / : Liu JW, Yang Y, Naismith JH

EMDB-53151:
Escherichia coli polynucleotide phosphorylase in complex with recognition site of RNase E
Method: single particle / : Paris G, Luisi BF

PDB-9qh0:
Escherichia coli polynucleotide phosphorylase in complex with recognition site of RNase E
Method: single particle / : Paris G, Luisi BF

EMDB-50042:
Wzc-K540M-2YE MgADP C1
Method: single particle / : Liu JW, Yang Y, Naismith JH

EMDB-50043:
Wzc-K540M-2YE MgADP C8
Method: single particle / : Liu JW, Yang Y, Naismith JH

EMDB-50044:
Wzc-K540M-3YE MgADP C1
Method: single particle / : Liu JW, Yang Y, Naismith JH

EMDB-50045:
Wzc-K540M-3YE MgADP C8
Method: single particle / : Liu JW, Yang Y, Naismith JH

EMDB-50046:
Wzc-K540M-3YE-N711Y MgADP C1
Method: single particle / : Liu JW, Yang Y, Naismith JH

EMDB-50047:
Wzc-K540M-3YE-N711Y MgADP C8
Method: single particle / : Liu JW, Yang Y, Naismith JH

PDB-9exo:
Wzc-K540M-2YE MgADP C1
Method: single particle / : Liu JW, Yang Y, Naismith JH

PDB-9exp:
Wzc-K540M-2YE MgADP C8
Method: single particle / : Liu JW, Yang Y, Naismith JH

PDB-9exq:
Wzc-K540M-3YE-N711Y MgADP C1
Method: single particle / : Liu JW, Yang Y, Naismith JH

PDB-9exr:
Wzc-K540M-3YE-N711Y MgADP C8
Method: single particle / : Liu JW, Yang Y, Naismith JH

EMDB-44070:
EV-D68 in complex with inhibitor Jun11-53-7
Method: single particle / : Klose T, Kuhn RJ, Jun W

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more