[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 336 items for (author: chou & t)

EMDB-39546:
SARS-CoV-2 Delta Spike in complex with JL-8C
Method: single particle / : Nguyen VHT, Chen X

EMDB-39547:
SARS-CoV-2 Delta Spike in complex with JM-1A
Method: single particle / : Nguyen VHT, Chen X

EMDB-39685:
SARS-CoV-2 Delta Spike in complex with Fab of JE-5C
Method: single particle / : Chen X, Wu YM

EMDB-39686:
SARS-CoV-2 Spike (BA.1) in complex with Fab of JH-8B
Method: single particle / : Chen X, Wu YM

EMDB-44479:
Cryo-EM structure of synthetic claudin-4 complex with Clostridium perfringens enterotoxin C-terminal domain, sFab COP-2, and Nanobody
Method: single particle / : Vecchio AJ

EMDB-36800:
Potassium transporter KtrAB from Bacillus subtilis in ADP-bound state
Method: single particle / : Chang YK, Chiang WT, Hu NJ, Tsai MD

EMDB-36801:
Potassium transporter KtrAB from Bacillus subtilis in ADP-bound state, focused refined on KtrA octamer
Method: single particle / : Chang YK, Chiang WT, Hu NJ, Tsai MD

EMDB-36802:
Potassium transporter KtrAB from Bacillus subtilis in ADP-bound state, focused refined on KtrB dimer
Method: single particle / : Chang YK, Chiang WT, Hu NJ, Tsai MD

EMDB-36803:
Potassium transporter KtrAB from Bacillus subtilis in ATP-bound state with addition of MgCl2
Method: single particle / : Chang YK, Chiang WT, Hu NJ, Tsai MD

EMDB-36804:
Potassium transporter KtrAB from Bacillus subtilis in ATP-bound state with addition of EDTA and EGTA
Method: single particle / : Chang YK, Chiang WT, Hu NJ, Tsai MD

EMDB-38477:
Potassium transporter KtrAB from Bacillus subtilis in ATP-bound state with addition of EDTA and EGTA, vertical C2 symmetry axis
Method: single particle / : Chang YK, Chiang WT, Hu NJ, Tsai MD

EMDB-38478:
Potassium transporter KtrAB from Bacillus subtilis in ATP-bound state with addition of EDTA and EGTA, C1 symmetry
Method: single particle / : Chang YK, Chiang WT, Hu NJ, Tsai MD

PDB-8k1s:
Potassium transporter KtrAB from Bacillus subtilis in ADP-bound state
Method: single particle / : Chang YK, Chiang WT, Hu NJ, Tsai MD

PDB-8k1t:
Potassium transporter KtrAB from Bacillus subtilis in ATP-bound state with addition of MgCl2
Method: single particle / : Chang YK, Chiang WT, Hu NJ, Tsai MD

PDB-8k1u:
Potassium transporter KtrAB from Bacillus subtilis in ATP-bound state with addition of EDTA and EGTA
Method: single particle / : Chang YK, Chiang WT, Hu NJ, Tsai MD

PDB-8xmh:
Potassium transporter KtrAB from Bacillus subtilis in ATP-bound state with addition of EDTA and EGTA, vertical C2 symmetry axis
Method: single particle / : Chang YK, Chiang WT, Hu NJ, Tsai MD

PDB-8xmi:
Potassium transporter KtrAB from Bacillus subtilis in ATP-bound state with addition of EDTA and EGTA, C1 symmetry
Method: single particle / : Chang YK, Chiang WT, Hu NJ, Tsai MD

EMDB-43658:
SARS-CoV-2 S (C.37 Lambda variant) plus S309, S2L20, and S2X303 Fabs
Method: single particle / : McCallum M, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

EMDB-43659:
SARS-CoV-2 S NTD (C.37 Lambda variant) plus S2L20 and S2X303 Fabs, local refinement
Method: single particle / : McCallum M, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

EMDB-43660:
SARS-CoV-2 S RBD (C.37 Lambda variant) plus S309 Fab, local refinement
Method: single particle / : McCallum M, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

PDB-8vye:
SARS-CoV-2 S (C.37 Lambda variant) plus S309, S2L20, and S2X303 Fabs
Method: single particle / : McCallum M, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

PDB-8vyf:
SARS-CoV-2 S NTD (C.37 Lambda variant) plus S2L20 and S2X303 Fabs, local refinement
Method: single particle / : McCallum M, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

PDB-8vyg:
SARS-CoV-2 S RBD (C.37 Lambda variant) plus S309 Fab, local refinement
Method: single particle / : McCallum M, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

EMDB-41423:
Cryo-EM structure of DDB1dB:CRBN:Pomalidomide:SD40
Method: single particle / : Roy Burman SS, Hunkeler M, Fischer ES

EMDB-41424:
Cryo-EM structure of DDB1dB:CRBN:PT-179:SD40, conformation 1
Method: single particle / : Roy Burman SS, Hunkeler M, Fischer ES

EMDB-41425:
Cryo-EM structure of DDB1dB:CRBN:PT-179:SD40, conformation 2
Method: single particle / : Roy Burman SS, Hunkeler M, Fischer ES

EMDB-41777:
Map from local refinement (focused on CRBN) of DDB1dB:CRBN:Pomalidomide:SD40
Method: single particle / : Roy Burman SS, Hunkeler M, Fischer ES

EMDB-41778:
Map from local refinement (focused on CRBN) of DDB1dB:CRBN:PT-179:SD40, conformation 1
Method: single particle / : Roy Burman SS, Hunkeler M, Fischer ES

EMDB-41779:
Map from local refinement (focused on CRBN) of DDB1dB:CRBN:PT-179:SD40, conformation 2
Method: single particle / : Roy Burman SS, Hunkeler M, Fischer ES

PDB-8tnp:
Cryo-EM structure of DDB1dB:CRBN:Pomalidomide:SD40
Method: single particle / : Roy Burman SS, Hunkeler M, Fischer ES

PDB-8tnq:
Cryo-EM structure of DDB1dB:CRBN:PT-179:SD40, conformation 1
Method: single particle / : Roy Burman SS, Hunkeler M, Fischer ES

PDB-8tnr:
Cryo-EM structure of DDB1dB:CRBN:PT-179:SD40, conformation 2
Method: single particle / : Roy Burman SS, Hunkeler M, Fischer ES

EMDB-19431:
Cryo-em structure of the rat Multidrug resistance-associated protein 2 (rMrp2) in an autoinhibited state (nucleotide-free)
Method: single particle / : Mazza T, Beis K

EMDB-19433:
Cryo-em structure of the rat Multidrug resistance-associated protein 2 (rMrp2) in complex with probenecid
Method: single particle / : Mazza T, Beis K

PDB-8rq3:
Cryo-em structure of the rat Multidrug resistance-associated protein 2 (rMrp2) in an autoinhibited state (nucleotide-free)
Method: single particle / : Mazza T, Beis K

PDB-8rq4:
Cryo-em structure of the rat Multidrug resistance-associated protein 2 (rMrp2) in complex with probenecid
Method: single particle / : Mazza T, Beis K

EMDB-40811:
Cryo-EM structure of NLRP3 open octamer
Method: single particle / : Yu X, Matico RE, Miller R, Schoubroeck BV, Grauwen K, Suarez J, Pietrak B, Haloi N, Yin Y, Tresadern GJ, Perez-Benito L, Lindahl E, Bottelbergs A, Oehlrich D, Opdenbosch NV, Sharma S

EMDB-40820:
Cryo-EM structure of NLRP3 closed hexamer
Method: single particle / : Yu X, Matico RE, Miller R, Schoubroeck BV, Grauwen K, Suarez J, Pietrak B, Haloi N, Yin Y, Tresadern GJ, Perez-Benito L, Lindahl E, Bottelbergs A, Oehlrich D, Opdenbosch NV, Sharma S

EMDB-40855:
Structure of NLRP3 and NEK7 complex
Method: single particle / : Yu X, Matico RE, Miller R, Schoubroeck BV, Grauwen K, Suarez J, Pietrak B, Haloi N, Yin Y, Tresadern GJ, Perez-Benito L, Lindahl E, Bottelbergs A, Oehlrich D, Opdenbosch NV, Sharma S

PDB-8swf:
Cryo-EM structure of NLRP3 open octamer
Method: single particle / : Yu X, Matico RE, Miller R, Schoubroeck BV, Grauwen K, Suarez J, Pietrak B, Haloi N, Yin Y, Tresadern GJ, Perez-Benito L, Lindahl E, Bottelbergs A, Oehlrich D, Opdenbosch NV, Sharma S

PDB-8swk:
Cryo-EM structure of NLRP3 closed hexamer
Method: single particle / : Yu X, Matico RE, Miller R, Schoubroeck BV, Grauwen K, Suarez J, Pietrak B, Haloi N, Yin Y, Tresadern GJ, Perez-Benito L, Lindahl E, Bottelbergs A, Oehlrich D, Opdenbosch NV, Sharma S

PDB-8sxn:
Structure of NLRP3 and NEK7 complex
Method: single particle / : Yu X, Matico RE, Miller R, Schoubroeck BV, Grauwen K, Suarez J, Pietrak B, Haloi N, Yin Y, Tresadern GJ, Perez-Benito L, Lindahl E, Bottelbergs A, Oehlrich D, Opdenbosch NV, Sharma S

EMDB-42787:
Arp2/3 branch junction complex, ADP state
Method: single particle / : Chavali SS, Chou SZ, Sindelar CV

EMDB-42788:
Arp2/3 branch junction complex, BeFx state
Method: single particle / : Chavali SS, Chou SZ, Sindelar CV

EMDB-42829:
Straight actin filament from Arp2/3 branch junction sample (ADP)
Method: helical / : Chavali SS, Chou SZ, Sindelar CV

EMDB-42830:
Straight actin filament from Arp2/3 branch junction sample (ADP-BeFx)
Method: helical / : Chavali SS, Chou SZ, Sindelar CV

PDB-8uxw:
Arp2/3 branch junction complex, ADP state
Method: single particle / : Chavali SS, Chou SZ, Sindelar CV

PDB-8uxx:
Arp2/3 branch junction complex, BeFx state
Method: single particle / : Chavali SS, Chou SZ, Sindelar CV

PDB-8uz0:
Straight actin filament from Arp2/3 branch junction sample (ADP)
Method: helical / : Chavali SS, Chou SZ, Sindelar CV

PDB-8uz1:
Straight actin filament from Arp2/3 branch junction sample (ADP-BeFx)
Method: helical / : Chavali SS, Chou SZ, Sindelar CV

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more