Pairwise fitting emdb-5023 on pdb-5khr by gmfit



Pairwise fitting of target emdb-5023 on reference pdb-5khr by gmfit(PID:4089798).

RANK[1] Corr.Coeff:0.463 [JSmol] [Molmil]
TARGET(emdb-5023)
display:
color:
Molecular Structure of the Native HIV-1 gp120 trimer bound to CD4 and 17b: Membrane region [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-5023)]
REFERENCE(pdb-5khr)
display:
color:
b'MODEL OF HUMAN ANAPHASE-PROMOTING COMPLEX/CYCLOSOME COMPLEX (APC15 ' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.463 0.439 0.439 0.432 0.392 0.392 0.391 0.388 0.382 0.339

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "5khr"(PDB-format) or "5khr"(mmCIF-format), and read it.
  2. Download the Target map "emd_5023.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.519592,-0.690546,-0.503161 92.594208 center 0,0,0 model #1
    move 217.350305,302.092214,-81.822499 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(pdb 5khr)] [Download the target GMM(emdb 5023)] [Download gmfit result file(4089798)]