Pairwise fitting emdb-1711 on pdb-4v1m by gmfit










Pairwise fitting of target emdb-1711 on reference pdb-4v1m by gmfit(PID:367208).





RANK[1] Corr.Coeff:0.694

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1711)

display:



color:



Pyrococcus furiosus RNA Polymerase [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1711)]







REFERENCE(pdb-4v1m)

display:



color:


b'ARCHITECTURE OF THE RNA POLYMERASE II-MEDIATOR CORE TRANSCRIPTION     ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.694
0.683
0.676
0.632
0.632
0.631
0.626
0.623
0.622
0.622







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "4v1m"(PDB-format) or 
 "4v1m"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1711.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.389929,0.062339,0.918732 56.138794 center 0,0,0 model #1
move 187.629700,192.409994,184.831838 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(pdb 4v1m)]

[Download the target GMM(emdb 1711)]

[Download gmfit result file(367208)]