Pairwise fitting emdb-5034 on emdb-1814 by gmfit










Pairwise fitting of target emdb-5034 on reference emdb-1814 by gmfit(PID:582712).





RANK[2] Corr.Coeff:0.353

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-5034)

display:



color:



Structure of a type IV secretion system core complex [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-5034)]







REFERENCE(emdb-1814)

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color:


Structural Comparison of HIV-1 Envelope Spikes with and without the V1V2 Loop [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.357
0.353
0.344
0.341
0.322
0.318
0.318
0.303
0.295
0.276







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_1814.map.gz", and read it.

  2.  Download the Target map "emd_5034.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.134310,-0.731491,0.668492 168.361098 center 0,0,0 model #1
move 298.144035,250.641967,213.169800 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!