Pairwise fitting emdb-5023 on emdb-5499 by gmfit










Pairwise fitting of target emdb-5023 on reference emdb-5499 by gmfit(PID:2992299).





RANK[5] Corr.Coeff:0.477

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-5023)

display:



color:



Molecular Structure of the Native HIV-1 gp120 trimer bound to CD4 and 17b: Membrane region [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-5023)]







REFERENCE(emdb-5499)

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CryoEM structure of Dengue virus, partial map [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.552
0.533
0.521
0.520
0.477
0.475
0.473
0.470
0.357
0.356







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_5499.map.gz", and read it.

  2.  Download the Target map "emd_5023.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.889679,-0.005290,-0.456556 156.809115 center 0,0,0 model #1
move -220.348526,164.559194,33.101994 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!