Pairwise fitting emdb-5372 on pdb-3iyc by gmfit










Pairwise fitting of target emdb-5372 on reference pdb-3iyc by gmfit(PID:2764296).





RANK[9] Corr.Coeff:0.003

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-5372)

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color:



Structural transitions in RCNMV revealing potential mechanism of RNA release (EGTA map) [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-5372)]







REFERENCE(pdb-3iyc)

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color:


b'POLIOVIRUS LATE RNA-RELEASE INTERMEDIATE                              ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.093
0.016
0.013
0.011
0.009
0.008
0.007
0.004
0.003
0.003







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "3iyc"(PDB-format) or 
 "3iyc"(mmCIF-format), and read it.

  2.  Download the Target map "emd_5372.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.497182,0.132552,0.857461 117.733426 center 0,0,0 model #1
move 41.247764,14.624948,128.223213 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!