Pairwise fitting emdb-1311 on emdb-1310 by gmfit










Pairwise fitting of target emdb-1311 on reference emdb-1310 by gmfit(PID:2743632).





RANK[10] Corr.Coeff:0.629

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1311)

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Cryo-EM visualization of transfer messenger RNA with two SmpBs in a stalled ribosome. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1311)]







REFERENCE(emdb-1310)

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Scaffolding as an organizing principle in trans-translation. The roles of small protein B and ribosomal protein S1. [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.924
0.884
0.730
0.713
0.683
0.674
0.657
0.651
0.648
0.629







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_1310.map.gz", and read it.

  2.  Download the Target map "emd_1311.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.398003,-0.551359,0.733210 174.959603 center 0,0,0 model #1
move 10.463784,1.927269,4.041700 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!