Pairwise fitting pdb-3dg4 on emdb-5360 by gmfit










Pairwise fitting of target pdb-3dg4 on reference emdb-5360 by gmfit(PID:1248219).





RANK[7] Corr.Coeff:0.678

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-3dg4)

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b'COORDINATES OF 16S AND 23S RRNAS FITTED INTO THE CRYO-EM MAP OF RF1-  ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-3dg4)]







REFERENCE(emdb-5360)

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color:


New mRNA-tRNA translocation intermediates revealed by cryoEM: Class 3 (unrotated 70S ribosome with P-site tRNA) [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.897
0.875
0.741
0.721
0.715
0.679
0.678
0.653
0.652
0.649







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_5360.map.gz", and read it.

  2.  Download the Target molecule "3dg4"(PDB-format) or
  "3dg4"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.991019,0.126827,0.042385 175.787909 center 0,0,0 model #1
move -4.872432,1.901866,2.391079 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!