Pairwise fitting emdb-5111 on emdb-1049 by gmfit










Pairwise fitting of target emdb-5111 on reference emdb-1049 by gmfit(PID:1134269).





RANK[9] Corr.Coeff:0.608

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-5111)

display:



color:



Feline panleukopenia virus in complex with FAb from neutralizing antibody MAb E [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-5111)]







REFERENCE(emdb-1049)

display:



color:


A cellular receptor of human rhinovirus type 2, the very-low-density lipoprotein receptor, binds to two neighboring proteins of the viral capsid. [Ngauss:20]



[Download the reference map]





Other Transformations
rank
1
2
3
4
5
6
7
8
9
10




Corr.Coeff.
0.638
0.623
0.617
0.612
0.611
0.609
0.609
0.608
0.608
0.606







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_1049.map.gz", and read it.

  2.  Download the Target map "emd_5111.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.338299,0.273998,-0.900266 106.961258 center 0,0,0 model #1
move -1.373442,0.428909,1.339731 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!