Pairwise fitting pdb-1k4r on pdb-3iyj by gmfit










Pairwise fitting of target pdb-1k4r on reference pdb-3iyj by gmfit(PID:1124078).





RANK[4] Corr.Coeff:0.376

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-1k4r)

display:



color:



b'STRUCTURE OF DENGUE VIRUS                                             ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-1k4r)]







REFERENCE(pdb-3iyj)

display:



color:


b'BOVINE PAPILLOMAVIRUS TYPE 1 OUTER CAPSID                             ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.481
0.383
0.377
0.376
0.370
0.357
0.353
0.351
0.350
0.350







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "3iyj"(PDB-format) or 
 "3iyj"(mmCIF-format), and read it.

  2.  Download the Target molecule "1k4r"(PDB-format) or
  "1k4r"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.561920,0.720336,0.406646 124.695991 center 0,0,0 model #1
move -167.744424,33.260474,336.942164 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!