[English] 日本語
Yorodumi Species
- Taxonomy data in EMDB/PDB/SASBDB -

-
Search query

Name, Taxonomy-ID, or Keywords:

-
Taxonomy info

Name *1Aeromonas hydrophila
Other names *1synonym: Aeromonas dourgesi / Aeromonas hydrophila (Chester 1901) Stanier 1943 (Approved Lists 1980) ...Aeromonas dourgesi / Aeromonas hydrophila (Chester 1901) Stanier 1943 (Approved Lists 1980) / Aeromonas liquefaciens / Bacillus hydrophilus fuscus / Bacterium hydrophilum / Proteus hydrophilus / Proteus ichthyosmius / Pseudomonas hydrophila / includes: Aeromonas sp. ATCC 14715 / Aeromonas sp. ATCC 19570 ...Aeromonas sp. ATCC 14715 / Aeromonas sp. ATCC 19570 / Aeromonas sp. CCRC 13881 / Aeromonas sp. CCRC 13980 / Aeromonas sp. E20 / Aeromonas sp. G17 / Aeromonas sp. TH001 / Aeromonas sp. TH003 / Aeromonas sp. TH019 / Aeromonas sp. TH020 / Aeromonas sp. TH021 / Aeromonas sp. TH022 / Aeromonas sp. TH023 / Aeromonas sp. TH024 / Aeromonas sp. TH025 / Aeromonas sp. TH026 / Aeromonas sp. TH027 / Aeromonas sp. TH028 / Aeromonas sp. TH029 / Aeromonas sp. TH030 / Aeromonas sp. TH031 / Aeromonas sp. TH033 / Aeromonas sp. TH034 / Aeromonas sp. TH036 / Aeromonas sp. TH054 / Aeromonas sp. TH055 / Aeromonas sp. TH058 / Aeromonas sp. TH068 / Aeromonas sp. TH069 / Aeromonas sp. TH071 / Aeromonas sp. TH072 / Aeromonas sp. TH083 / Aeromonas sp. TH084 / Aeromonas sp. TH085 / Aeromonas sp. TH097 / Aeromonas sp. TH100 / Aeromonas sp. TH102 / Aeromonas sp. TH104 / Aeromonas sp. TH105 / Aeromonas sp. TH107 / Aeromonas sp. TH108 / Aeromonas sp. TH109 / Aeromonas sp. TH110 / Aeromonas sp. TH113 / Aeromonas sp. TH115 / Aeromonas sp. TH117 / Aeromonas sp. TH118 / Aeromonas sp. TH120 / Aeromonas sp. TH121 / Aeromonas sp. TH122 / Aeromonas sp. TH123 / Aeromonas sp. TH124 / Aeromonas sp. TH125 / Aeromonas sp. TH126 / Aeromonas sp. TH127 / Aeromonas sp. TH128 / Aeromonas sp. TH129 / Aeromonas sp. TH130 / Aeromonas sp. TH131 / Aeromonas sp. TH132 / Aeromonas sp. TH133 / Aeromonas sp. TH134 / Aeromonas sp. TH135 / Aeromonas sp. TH136 / Aeromonas sp. TH137 / Aeromonas sp. TH138 / Aeromonas sp. TH139 / Aeromonas sp. TH140 / Aeromonas sp. TH141 / Aeromonas sp. TH142 / others: Aeromonas hydrophila (Chester 1901) Stanier 1943 (Approved Lists 1980) emend. Beaz-Hidalgo et al. 2013 / "Aeromonas liquefaciens" Kluyver and van Niel 1936 ...Aeromonas hydrophila (Chester 1901) Stanier 1943 (Approved Lists 1980) emend. Beaz-Hidalgo et al. 2013 / "Aeromonas liquefaciens" Kluyver and van Niel 1936 / ATCC 7966 / "Bacillus hydrophilus fuscus" Sanarelli 1871 / "Bacterium hydrophilum" (Chester 1901) Weldin and Levine 1923 / BCRC 13018 / CCRC 13018 / CCRC:13018 / CCUG 14551 / CDC 359-60 / CECT 839 / CIP 76.14 / DSM 30187 / HAMBI 1847 / HAMBI 1973 / IAM 12460 / JCM 1027 / LMG 12156 / LMG:12156 / LMG 13439 / LMG:13439 / LMG 2844 / LMG:2844 / NCDC 359-60 / NCIB 9240 / NCIMB 9240 / NCMB 86 / NCMB:86 / NCTC 8049 / "Proteus hydrophilus" (Chester 1901) Bergey et al. 1923 / "Pseudomonas hydrophila" (Chester 1901) Breed et al. 1948
NCBI Taxonomy ID644
Lineage *1cellular organisms > Bacteria > Pseudomonadota > Gammaproteobacteria > Aeromonadales > Aeromonadaceae > Aeromonas
WikipediaWikipedia - Aeromonas hydrophila:

Aeromonas hydrophila is a heterotrophic, Gram-negative, rod-shaped bacterium mainly found in areas with a warm climate. This bacterium can be found in fresh or brackish water...

Commentbacteria
References*1: NCBI Taxonomy

-
EMDB entries (4)

Showing all 4 items

EMDB-0326:
Aeromonas hydrophila ExeD

EMDB-8185:
aerolysin prepore cryo-EM map

EMDB-8187:
aerolysin pore cryo-EM map

EMDB-8188:
aerolysin post-prepore and quasipore cryo-EM maps.

-
PDB entries (46)

-
SASBDB entries

No item found

+
About Yorodumi Species

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jan 31, 2019. EMDB accession codes are about to change! (news from PDBe EMDB page)

EMDB accession codes are about to change! (news from PDBe EMDB page)

  • The allocation of 4 digits for EMDB accession codes will soon come to an end. Whilst these codes will remain in use, new EMDB accession codes will include an additional digit and will expand incrementally as the available range of codes is exhausted. The current 4-digit format prefixed with “EMD-” (i.e. EMD-XXXX) will advance to a 5-digit format (i.e. EMD-XXXXX), and so on. It is currently estimated that the 4-digit codes will be depleted around Spring 2019, at which point the 5-digit format will come into force.
  • The EM Navigator/Yorodumi systems omit the EMD- prefix.

Related info.:Q: What is EMD? / ID/Accession-code notation in Yorodumi/EM Navigator

External links:EMDB Accession Codes are Changing Soon! / Contact to PDBj

+
Jul 12, 2017. Major update of PDB

Major update of PDB

  • wwPDB released updated PDB data conforming to the new PDBx/mmCIF dictionary.
  • This is a major update changing the version number from 4 to 5, and with Remediation, in which all the entries are updated.
  • In this update, many items about electron microscopy experimental information are reorganized (e.g. em_software).
  • Now, EM Navigator and Yorodumi are based on the updated data.

External links:wwPDB Remediation / Enriched Model Files Conforming to OneDep Data Standards Now Available in the PDB FTP Archive

-
Yorodumi Speices

Taxonomy data in EMDB/PDB/SASBDB

Taxonomy database of sample sources of data in EMDB/PDB/SASBDB

Related info.:EMDB / PDB / SASBDB / Comparison of 3 databanks / Mar 5, 2020. Novel coronavirus structure data

Read more