[English] 日本語
Yorodumi- PDB-5xs1: Solution structure of Crustacean Hyperglycemic Hormone-like (CHH-... -
+Open data
-Basic information
Entry | Database: PDB / ID: 5xs1 | ||||||
---|---|---|---|---|---|---|---|
Title | Solution structure of Crustacean Hyperglycemic Hormone-like (CHH-L) from the Scylla Olivacea | ||||||
Components | Hyperglycemic hormone-like peptide | ||||||
Keywords | HORMONE / Crustacean Hyperglycemic Hormone / neuropeptide | ||||||
Function / homology | Function and homology information neuropeptide hormone activity / neuropeptide signaling pathway / extracellular region Similarity search - Function | ||||||
Biological species | Scylla olivacea (orange mud crab) | ||||||
Method | SOLUTION NMR / distance geometry | ||||||
Authors | Chen, Y.R. / Lyu, P.C. | ||||||
Funding support | Taiwan, 1items
| ||||||
Citation | Journal: To Be Published Title: Solution structure of Crustacean Hyperglycemic Hormone-like (CHH-L) from the Scylla Olivacea Authors: Chen, Y.R. / Lyu, P.C. | ||||||
History |
|
-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
---|
-Downloads & links
-Download
PDBx/mmCIF format | 5xs1.cif.gz | 224.5 KB | Display | PDBx/mmCIF format |
---|---|---|---|---|
PDB format | pdb5xs1.ent.gz | 193.7 KB | Display | PDB format |
PDBx/mmJSON format | 5xs1.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/xs/5xs1 ftp://data.pdbj.org/pub/pdb/validation_reports/xs/5xs1 | HTTPS FTP |
---|
-Related structure data
Similar structure data | |
---|---|
Other databases |
|
-Links
-Assembly
Deposited unit |
| |||||||||
---|---|---|---|---|---|---|---|---|---|---|
1 |
| |||||||||
NMR ensembles |
|
-Components
#1: Protein | Mass: 8511.561 Da / Num. of mol.: 1 / Fragment: UNP residues 67-139 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Scylla olivacea (orange mud crab) / Production host: Escherichia coli BL21(DE3) (bacteria) / Strain (production host): BL21(DE3) / References: UniProt: A5A599 |
---|
-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
NMR experiment |
|
-Sample preparation
Details | Type: solution / Contents: 0.9 mM [U-13C; U-15N] CHH-L, 90% H2O/10% D2O / Label: 13C_15N_sample / Solvent system: 90% H2O/10% D2O |
---|---|
Sample | Conc.: 0.9 mM / Component: CHH-L / Isotopic labeling: [U-13C; U-15N] |
Sample conditions | Details: citrate phosphate 10 mM; sodium chloride 100 mM; potassium chloride 10 mM; L-Glu 50 mM; sodium azide 0.02% Ionic strength: 0.13 M / Label: condition_1 / pH: 3 / Pressure: 1 atm / Temperature: 298 K |
-NMR measurement
NMR spectrometer |
|
---|
-Processing
NMR software |
| ||||||||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Refinement | Method: distance geometry / Software ordinal: 7 | ||||||||||||||||||||||||||||||
NMR representative | Selection criteria: lowest energy | ||||||||||||||||||||||||||||||
NMR ensemble | Conformer selection criteria: structures with the lowest energy Conformers calculated total number: 10 / Conformers submitted total number: 10 |