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Yorodumi- PDB-5lqh: A two-quartet G-quadruplex formed by human telomere in KCl soluti... -
+Open data
-Basic information
Entry | Database: PDB / ID: 5lqh | ||||||||||||||||||||
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Title | A two-quartet G-quadruplex formed by human telomere in KCl solution at pH 5.0 | ||||||||||||||||||||
Components | DNA (5'-D(*Keywords | DNA / human telomere repeat / G-quadruplex / topology | Function / homology | DNA / DNA (> 10) | Function and homology information Biological species | Homo sapiens (human) | Method | SOLUTION NMR / simulated annealing | Authors | Galer, P. / Wang, B. / Sket, P. / Plavec, J. | Citation | Journal: Angew.Chem.Int.Ed.Engl. / Year: 2016 | Title: Reversible pH Switch of Two-Quartet G-Quadruplexes Formed by Human Telomere. Authors: Galer, P. / Wang, B. / Sket, P. / Plavec, J. History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 5lqh.cif.gz | 144.1 KB | Display | PDBx/mmCIF format |
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PDB format | pdb5lqh.ent.gz | 114.5 KB | Display | PDB format |
PDBx/mmJSON format | 5lqh.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/lq/5lqh ftp://data.pdbj.org/pub/pdb/validation_reports/lq/5lqh | HTTPS FTP |
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-Related structure data
Related structure data | 5lqgC C: citing same article (ref.) |
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Similar structure data | |
Other databases |
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-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: DNA chain | Mass: 6958.484 Da / Num. of mol.: 1 / Source method: obtained synthetically / Source: (synth.) Homo sapiens (human) |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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NMR experiment |
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-Sample preparation
Details |
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Sample |
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Sample conditions | Ionic strength: 70 mM / Label: conditions_1 / pH: 5.0 / Pressure: 1 atm / Temperature: 278 K |
-NMR measurement
NMR spectrometer |
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-Processing
NMR software |
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Refinement | Method: simulated annealing / Software ordinal: 6 | ||||||||||||||||||||||||||||
NMR representative | Selection criteria: lowest energy | ||||||||||||||||||||||||||||
NMR ensemble | Conformer selection criteria: structures with the least restraint violations Conformers calculated total number: 100 / Conformers submitted total number: 10 |