[English] 日本語
![](img/lk-miru.gif)
- PDB-4fsf: Crystal structure of Pseudomonas aeruginosa PBP3 complexed with c... -
+
Open data
-
Basic information
Entry | Database: PDB / ID: 4fsf | ||||||
---|---|---|---|---|---|---|---|
Title | Crystal structure of Pseudomonas aeruginosa PBP3 complexed with compound 14 | ||||||
![]() | Penicillin-binding protein 3 | ||||||
![]() | PENICILLIN-BINDING PROTEIN/ANTIBIOTIC / penicillin binding protein / PENICILLIN-BINDING PROTEIN-ANTIBIOTIC complex | ||||||
Function / homology | ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() Similarity search - Function | ||||||
Biological species | ![]() ![]() ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Han, S. | ||||||
![]() | ![]() Title: Novel monobactams utilizing a siderophore uptake mechanism for the treatment of gram-negative infections. Authors: Mitton-Fry, M.J. / Arcari, J.T. / Brown, M.F. / Casavant, J.M. / Finegan, S.M. / Flanagan, M.E. / Gao, H. / George, D.M. / Gerstenberger, B.S. / Han, S. / Hardink, J.R. / Harris, T.M. / ...Authors: Mitton-Fry, M.J. / Arcari, J.T. / Brown, M.F. / Casavant, J.M. / Finegan, S.M. / Flanagan, M.E. / Gao, H. / George, D.M. / Gerstenberger, B.S. / Han, S. / Hardink, J.R. / Harris, T.M. / Hoang, T. / Huband, M.D. / Irvine, R. / Lall, M.S. / Megan Lemmon, M. / Li, C. / Lin, J. / McCurdy, S.P. / Mueller, J.P. / Mullins, L. / Niosi, M. / Noe, M.C. / Pattavina, D. / Penzien, J. / Plummer, M.S. / Risley, H. / Schuff, B.P. / Shanmugasundaram, V. / Starr, J.T. / Sun, J. / Winton, J. / Young, J.A. | ||||||
History |
|
-
Structure visualization
Structure viewer | Molecule: ![]() ![]() |
---|
-
Downloads & links
-
Download
PDBx/mmCIF format | ![]() | 204 KB | Display | ![]() |
---|---|---|---|---|
PDB format | ![]() | 168.8 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Arichive directory | ![]() ![]() | HTTPS FTP |
---|
-Related structure data
Similar structure data |
---|
-
Links
-
Assembly
Deposited unit | ![]()
| ||||||||
---|---|---|---|---|---|---|---|---|---|
1 |
| ||||||||
Unit cell |
|
-
Components
#1: Protein | Mass: 58141.211 Da / Num. of mol.: 1 / Fragment: UNP residues 50-579 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() ![]() ![]() ![]() |
---|---|
#2: Chemical | ChemComp-0W0 / ( |
#3: Water | ChemComp-HOH / ![]() |
-Experimental details
-Experiment
Experiment | Method: ![]() |
---|
-
Sample preparation
Crystal | Density Matthews: 2.14 Å3/Da / Density % sol: 42.39 % |
---|---|
Crystal grow![]() | Temperature: 298 K / Method: vapor diffusion, hanging drop / pH: 8.5 Details: 30% PEG4000, 0.2M MgCl2 0.1M Tris pH8.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K |
-Data collection
Diffraction | Mean temperature: 100 K |
---|---|
Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: PSI PILATUS 6M / Detector: PIXEL / Date: Sep 1, 2010 |
Radiation | Monochromator: mirrors / Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength![]() |
Reflection | Resolution: 2.2→50 Å / Num. obs: 25112 / % possible obs: 96.5 % / Observed criterion σ(F): 0 / Observed criterion σ(I): 0 / Biso Wilson estimate: 39.98 Å2 |
Reflection shell | Resolution: 2.2→2.28 Å / % possible all: 85.7 |
-
Processing
Software |
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Refinement | Method to determine structure![]() ![]()
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso mean: 49.16 Å2
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refine analyze | Luzzati coordinate error obs: 0.392 Å | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 2.2→25.11 Å
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refine LS restraints |
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
LS refinement shell | Resolution: 2.2→2.29 Å / Total num. of bins used: 13
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement TLS params. | Method: refined / Origin x: 5.4564 Å / Origin y: -19.9527 Å / Origin z: -1.4919 Å
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement TLS group | Selection details: { A|53 - A|563 } |