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- PDB-4b0y: Determination of X-ray Structure of human SOUL by Molecular Repla... -
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Open data
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Basic information
Entry | Database: PDB / ID: 4b0y | ||||||
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Title | Determination of X-ray Structure of human SOUL by Molecular Replacement | ||||||
![]() | HEME-BINDING PROTEIN 2 | ||||||
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Function / homology | ![]() azurophil granule lumen / ![]() ![]() ![]() Similarity search - Function | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Freire, F. / Carvalho, A.L. / Aveiro, S.S. / Charbonnier, P. / Moulis, J.M. / Romao, M.J. / Goodfellow, B.J. / Macedo, A.L. | ||||||
![]() | ![]() Title: Human Soul: A Heme-Binding or a Bh3 Domain-Containing Protein Authors: Freire, F. / Carvalho, A.L. / Aveiro, S.S. / Charbonnier, P. / Moulis, J.M. / Romao, M.J. / Goodfellow, B.J. / Macedo, A.L. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 79.5 KB | Display | ![]() |
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PDB format | ![]() | 59.5 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Arichive directory | ![]() ![]() | HTTPS FTP |
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-Related structure data
Related structure data | ![]() 4ayzSC S: Starting model for refinement C: citing same article ( |
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Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 25550.295 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() ![]() ![]() |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 3.6 Å3/Da / Density % sol: 66 % / Description: NONE |
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Crystal grow![]() | pH: 6.5 / Details: 2 M AMMONIUM SULPHATE, 0.1 M MES 6.5 |
-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: ADSC QUANTUM 4 / Detector: CCD / Date: Sep 7, 2007 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength![]() |
Reflection | Resolution: 3.5→47.35 Å / Num. obs: 5025 / % possible obs: 100 % / Observed criterion σ(I): 6.2 / Redundancy: 30.8 % / Rmerge(I) obs: 0.15 / Net I/σ(I): 24.6 |
Reflection shell | Resolution: 3.5→3.69 Å / Redundancy: 32.2 % / Rmerge(I) obs: 0.75 / Mean I/σ(I) obs: 6.2 / % possible all: 100 |
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Processing
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Refinement | Method to determine structure![]() ![]() Starting model: PDB ENTRY 4AYZ Resolution: 3.5→47.35 Å / Cor.coef. Fo:Fc: 0.868 / Cor.coef. Fo:Fc free: 0.809 / SU B: 61.251 / SU ML: 0.435 / Cross valid method: THROUGHOUT / ESU R: 1.273 / ESU R Free: 0.586 Stereochemistry target values: MAXIMUM LIKELIHOOD WITH PHASES Details: HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS.
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Solvent computation | Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.4 Å / Solvent model: MASK | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso mean: 43.441 Å2
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Refinement step | Cycle: LAST / Resolution: 3.5→47.35 Å
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Refine LS restraints |
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