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- PDB-3zuw: Photosynthetic Reaction Centre Mutant with TYR L128 replaced with HIS -
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Open data
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Basic information
Entry | Database: PDB / ID: 3zuw | ||||||
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Title | Photosynthetic Reaction Centre Mutant with TYR L128 replaced with HIS | ||||||
![]() | (REACTION CENTER PROTEIN ...![]() | ||||||
![]() | ![]() ![]() | ||||||
Function / homology | ![]() plasma membrane-derived chromatophore membrane / plasma membrane light-harvesting complex / ![]() ![]() ![]() Similarity search - Function | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Gibasiewicz, K. / Pajzderska, M. / Potter, J.A. / Fyfe, P.K. / Dobek, A. / Brettel, K. / Jones, M.R. | ||||||
![]() | ![]() Title: Mechanism of Recombination of the P(+)H(A)(-) Radical Pair in Mutant Rhodobacter Sphaeroides Reaction Centers with Modified Free Energy Gaps between P(+)B(A)(-) and P(+)H(A)(-). Authors: Gibasiewicz, K. / Pajzderska, M. / Potter, J.A. / Fyfe, P.K. / Dobek, A. / Brettel, K. / Jones, M.R. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 207.4 KB | Display | ![]() |
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PDB format | ![]() | 162.3 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Arichive directory | ![]() ![]() | HTTPS FTP |
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-Related structure data
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components on special symmetry positions |
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Components
-REACTION CENTER PROTEIN ... , 3 types, 3 molecules HLM
#1: Protein | ![]() Mass: 28066.322 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() ![]() |
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#2: Protein | ![]() Mass: 31321.361 Da / Num. of mol.: 1 / Mutation: YES Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() ![]() |
#3: Protein | ![]() Mass: 34398.543 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() ![]() |
-Non-polymers , 8 types, 319 molecules ![](data/chem/img/LDA.gif)
![](data/chem/img/BCL.gif)
![](data/chem/img/BPH.gif)
![](data/chem/img/U10.gif)
![](data/chem/img/FE.gif)
![](data/chem/img/PO4.gif)
![](data/chem/img/SPN.gif)
![](data/chem/img/HOH.gif)
![](data/chem/img/BCL.gif)
![](data/chem/img/BPH.gif)
![](data/chem/img/U10.gif)
![](data/chem/img/FE.gif)
![](data/chem/img/PO4.gif)
![](data/chem/img/SPN.gif)
![](data/chem/img/HOH.gif)
#4: Chemical | ChemComp-LDA / ![]() #5: Chemical | ChemComp-BCL / ![]() #6: Chemical | ![]() #7: Chemical | ![]() #8: Chemical | ChemComp-FE / | ![]() #9: Chemical | ![]() #10: Chemical | ChemComp-SPN / | #11: Water | ChemComp-HOH / | ![]() |
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-Details
Compound details | ENGINEEREDSequence details | RESIDUE L128 HAS BEEN MUTATED TO HIS | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 5.73 Å3/Da / Density % sol: 78.6 % / Description: NONE |
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Crystal grow![]() | Method: vapor diffusion, sitting drop Details: VAPOUR DIFFUSION, SITTING DROP, 0.09% LDAO, 3.5% 1,2,3 HEPTANETRIOL, 0.75M POTASSIUM PHOSPHATE PH7.5 |
-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: ADSC QUANTUM 4 / Detector: CCD |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength![]() |
Reflection | Resolution: 2.3→17.9 Å / Num. obs: 85153 / % possible obs: 97.9 % / Observed criterion σ(I): -3 / Redundancy: 4.3 % / Biso Wilson estimate: 43.5 Å2 / Rmerge(I) obs: 0.07 |
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Processing
Software | Name: REFMAC / Version: 5.5.0109 / Classification: refinement | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Refinement | Method to determine structure![]() ![]()
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Solvent computation | Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.4 Å / Solvent model: MASK | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso mean: 39.001 Å2
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Refinement step | Cycle: LAST / Resolution: 2.31→17.87 Å
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Refine LS restraints |
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