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- PDB-2xvv: Human serum albumin complexed with dansyl-L-asparagine and myrist... -
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Open data
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Basic information
Entry | Database: PDB / ID: 2xvv | ||||||
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Title | Human serum albumin complexed with dansyl-L-asparagine and myristic acid | ||||||
![]() | SERUM ALBUMIN![]() | ||||||
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Function / homology | ![]() cellular response to calcium ion starvation / ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() Similarity search - Function | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Ghuman, J. / Curry, S. | ||||||
![]() | ![]() Title: Structural Basis of Binding of Fluorescent, Site-Specific Dansylated Amino Acids to Human Serum Albumin. Authors: Ryan, A.J. / Ghuman, J. / Zunszain, P.A. / Chung, C.W. / Curry, S. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 129 KB | Display | ![]() |
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PDB format | ![]() | 99.7 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Arichive directory | ![]() ![]() | HTTPS FTP |
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-Related structure data
Related structure data | ![]() 2xsiC ![]() 2xvqC ![]() 2xvuC ![]() 2xvwC ![]() 2xw0C ![]() 2xw1C ![]() 1e7gS C: citing same article ( S: Starting model for refinement |
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Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components
#1: Protein | ![]() Mass: 66543.141 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() ![]() | ||||||
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#2: Chemical | ChemComp-MYR / ![]() #3: Chemical | #4: Water | ChemComp-HOH / | ![]() Sequence details | SEQUENCE NUMBERING IS OF MATURE (SECRETED) PROTEIN. | |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.66 Å3/Da / Density % sol: 54 % / Description: NONE |
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Crystal grow![]() | pH: 7 / Details: SEE PAPER, pH 7 |
-Data collection
Diffraction | Mean temperature: 298 K |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: ADSC QUANTUM 4 / Detector: CCD / Date: Oct 25, 2002 / Details: MIRRORS |
Radiation | Monochromator: CRYSTAL / Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength![]() |
Reflection | Resolution: 2.4→22.5 Å / Num. obs: 25305 / % possible obs: 96.3 % / Observed criterion σ(I): 0 / Redundancy: 1.9 % / Biso Wilson estimate: 37.1 Å2 / Rmerge(I) obs: 0.04 / Net I/σ(I): 11.4 |
Reflection shell | Resolution: 2.4→2.55 Å / Redundancy: 1.9 % / Rmerge(I) obs: 0.31 / Mean I/σ(I) obs: 2.6 / % possible all: 96.7 |
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Processing
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Refinement | Method to determine structure![]() ![]() Starting model: PDB ENTRY 1E7G Resolution: 2.4→22.09 Å / Rfactor Rfree error: 0.007 / Data cutoff high absF: 1792826.31 / Data cutoff low absF: 0 / Isotropic thermal model: RESTRAINED / Cross valid method: THROUGHOUT / σ(F): 0 / Stereochemistry target values: MLF / Details: BULK SOLVENT MODEL USED
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Solvent computation | Solvent model: FLAT MODEL / Bsol: 59.6896 Å2 / ksol: 0.35 e/Å3 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso mean: 54.4 Å2
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Refine analyze |
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Refinement step | Cycle: LAST / Resolution: 2.4→22.09 Å
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Refine LS restraints |
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Refine LS restraints NCS | NCS model details: NONE | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
LS refinement shell | Resolution: 2.4→2.55 Å / Rfactor Rfree error: 0.026 / Total num. of bins used: 6
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Xplor file |
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