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- PDB-2wvv: Crystal structure of an alpha-L-fucosidase GH29 from Bacteroides ... -
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Open data
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Basic information
Entry | Database: PDB / ID: 2wvv | ||||||
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Title | Crystal structure of an alpha-L-fucosidase GH29 from Bacteroides thetaiotaomicron | ||||||
![]() | (ALPHA-L-FUCOSIDASE![]() | ||||||
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Function / homology | ![]() ![]() ![]() Similarity search - Function | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Lammerts van Bueren, A. / Ardevol, A. / Fayers-Kerr, J. / Luo, B. / Zhang, Y. / Sollogoub, M. / Bleriot, Y. / Rovira, C. / Davies, G.J. | ||||||
![]() | ![]() Title: Analysis of the Reaction Coordinate of Alpha-L-Fucosidases: A Combined Structural and Quantum Mechanical Approach Authors: Lammerts Van Bueren, A. / Ardevol, A. / Fayers-Kerr, J. / Luo, B. / Zhang, Y. / Sollogoub, M. / Bleriot, Y. / Rovira, C. / Davies, G.J. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 381.1 KB | Display | ![]() |
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PDB format | ![]() | 309.9 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Arichive directory | ![]() ![]() | HTTPS FTP |
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-Related structure data
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Links
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Assembly
Deposited unit | ![]()
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1 | ![]()
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2 | ![]()
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3 | ![]()
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4 | ![]()
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Unit cell |
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Components
-Protein , 2 types, 4 molecules ACDB
#1: Protein | ![]() Mass: 52080.930 Da / Num. of mol.: 3 / Fragment: RESIDUES 35-484 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() Strain: VPI-5482 / Plasmid: PET28 / Production host: ![]() ![]() ![]() #2: Protein | | ![]() Mass: 52080.930 Da / Num. of mol.: 1 / Fragment: RESIDUES 35-484 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() Strain: VPI-5482 / Plasmid: PET28 / Production host: ![]() ![]() ![]() |
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-Non-polymers , 4 types, 1101 molecules ![](data/chem/img/TRS.gif)
![](data/chem/img/SO4.gif)
![](data/chem/img/GOL.gif)
![](data/chem/img/HOH.gif)
![](data/chem/img/SO4.gif)
![](data/chem/img/GOL.gif)
![](data/chem/img/HOH.gif)
#3: Chemical | ChemComp-TRS / ![]() #4: Chemical | ChemComp-SO4 / ![]() #5: Chemical | ChemComp-GOL / ![]() #6: Water | ChemComp-HOH / | ![]() |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.45 Å3/Da / Density % sol: 55.6 % / Description: NONE |
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-Data collection
Diffraction | Mean temperature: 120 K |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: ADSC CCD / Detector: CCD / Date: Apr 18, 2009 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength![]() |
Reflection | Resolution: 1.73→48 Å / Num. obs: 208289 / % possible obs: 99.7 % / Observed criterion σ(I): 2 / Redundancy: 3.7 % / Rmerge(I) obs: 0.08 / Net I/σ(I): 10 |
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Processing
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Refinement | Method to determine structure![]() ![]() Details: HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. U VALUES REFINED INDIVIDUALLY
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Solvent computation | Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.4 Å / Solvent model: MASK | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso mean: 21.782 Å2
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Refinement step | Cycle: LAST / Resolution: 1.73→97.56 Å
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Refine LS restraints |
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