- PDB-2vno: Family 51 carbohydrate binding module from a family 98 glycoside ... -
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Basic information
Entry
Database: PDB / ID: 2vno
Title
Family 51 carbohydrate binding module from a family 98 glycoside hydrolase produced by Clostridium perfringens in complex with blood group B-trisaccharide ligand.
Components
CPE0329
Keywords
HYDROLASE / FAMILY 51 CARBOHYDRATE BINDING MODULE / CLOSTRIDIUM PERFRINGENS / FAMILY 98 GLYCOSIDE HYDROLASE / B-TRISACCHARIDE / BLOOD GROUP ANTIGENS
SHEET THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN ORDER TO REPRESENT THIS FEATURE IN ... SHEET THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, TWO SHEETS ARE DEFINED.
Monochromator: NI FILTER / Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray
Radiation wavelength
Wavelength: 1.5418 Å / Relative weight: 1
Reflection
Resolution: 1.45→100 Å / Num. obs: 55064 / % possible obs: 95.4 % / Observed criterion σ(I): 2 / Redundancy: 3.9 % / Rmerge(I) obs: 0.04 / Net I/σ(I): 14.6
Reflection shell
Resolution: 1.45→1.49 Å / Redundancy: 3.9 % / % possible all: 97.6
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Processing
Software
Name
Version
Classification
REFMAC
5.2.0019
refinement
CrystalClear
datareduction
d*TREK
datascaling
Refinement
Method to determine structure: OTHER Starting model: NONE Resolution: 1.45→100 Å / Cor.coef. Fo:Fc: 0.972 / Cor.coef. Fo:Fc free: 0.957 / SU B: 3.159 / SU ML: 0.056 / Cross valid method: THROUGHOUT / ESU R: 0.098 / ESU R Free: 0.083 / Stereochemistry target values: MAXIMUM LIKELIHOOD / Details: HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS.
Rfactor
Num. reflection
% reflection
Selection details
Rfree
0.226
2917
5 %
RANDOM
Rwork
0.18
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obs
0.182
55064
95.4 %
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Solvent computation
Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.4 Å / Solvent model: MASK