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Yorodumi- PDB-2e6p: Solution structure of the Ig-like domain (714-804) from human Obs... -
+Open data
-Basic information
Entry | Database: PDB / ID: 2e6p | ||||||
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Title | Solution structure of the Ig-like domain (714-804) from human Obscurin-like protein 1 | ||||||
Components | Obscurin-like protein 1 | ||||||
Keywords | STRUCTURAL PROTEIN / Ig-like domain / Obscurin-like protein 1 / Structural Genomics / NPPSFA / National Project on Protein Structural and Functional Analyses / RIKEN Structural Genomics/Proteomics Initiative / RSGI | ||||||
Function / homology | Function and homology information 3M complex / protein localization to Golgi apparatus / cardiac myofibril assembly / cytoskeletal anchor activity / M band / positive regulation of dendrite morphogenesis / regulation of mitotic nuclear division / Golgi organization / intercalated disc / cytoskeleton organization ...3M complex / protein localization to Golgi apparatus / cardiac myofibril assembly / cytoskeletal anchor activity / M band / positive regulation of dendrite morphogenesis / regulation of mitotic nuclear division / Golgi organization / intercalated disc / cytoskeleton organization / microtubule cytoskeleton organization / Z disc / Neddylation / centrosome / perinuclear region of cytoplasm / Golgi apparatus / cytosol / cytoplasm Similarity search - Function | ||||||
Biological species | Homo sapiens (human) | ||||||
Method | SOLUTION NMR / Torsion angle dynamic | ||||||
Authors | Qin, X.R. / Suetake, T. / Hayashi, F. / Yokoyama, S. / RIKEN Structural Genomics/Proteomics Initiative (RSGI) | ||||||
Citation | Journal: To be published Title: Solution structure of the Ig-like domain (714-804) from human Obscurin-like protein 1 Authors: Qin, X.R. / Suetake, T. / Hayashi, F. / Yokoyama, S. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 2e6p.cif.gz | 603.6 KB | Display | PDBx/mmCIF format |
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PDB format | pdb2e6p.ent.gz | 505.2 KB | Display | PDB format |
PDBx/mmJSON format | 2e6p.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/e6/2e6p ftp://data.pdbj.org/pub/pdb/validation_reports/e6/2e6p | HTTPS FTP |
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-Related structure data
Similar structure data | |
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Other databases |
-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: Protein | Mass: 11257.560 Da / Num. of mol.: 1 / Fragment: Ig-like domain Source method: isolated from a genetically manipulated source Source: (gene. exp.) Homo sapiens (human) / Description: cell free protein synthesis / Gene: OBSL1, KIAA0657 / Plasmid: P050919-02 / References: UniProt: O75147 |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||
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NMR experiment |
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-Sample preparation
Details | Contents: 1.17mM 13C, 15N-labeled protein; 20mM d-Tris-HCl(pH7.0); 100mM NaCl; 1mM d-DTT; 0.02% NaN3; 90% H2O, 10% D2O Solvent system: 90% H2O/10% D2O |
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Sample conditions | Ionic strength: 120mM / pH: 7.0 / Pressure: ambient / Temperature: 298 K |
-NMR measurement
NMR spectrometer | Type: Varian INOVA / Manufacturer: Varian / Model: INOVA / Field strength: 800 MHz |
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-Processing
NMR software |
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Refinement | Method: Torsion angle dynamic / Software ordinal: 1 | ||||||||||||||||||||||||||||
NMR representative | Selection criteria: lowest energy | ||||||||||||||||||||||||||||
NMR ensemble | Conformer selection criteria: structures with the least restraint violations, structures with the lowest energy, target function Conformers calculated total number: 100 / Conformers submitted total number: 20 |