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- PDB-1jr1: Crystal structure of Inosine Monophosphate Dehydrogenase in compl... -
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Open data
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Basic information
Entry | Database: PDB / ID: 1jr1 | ||||||
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Title | Crystal structure of Inosine Monophosphate Dehydrogenase in complex with Mycophenolic Acid | ||||||
![]() | Inosine-5'-Monophosphate Dehydrogenase 2 | ||||||
![]() | ![]() ![]() ![]() | ||||||
Function / homology | ![]() lymphocyte proliferation / ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() Similarity search - Function | ||||||
Biological species | ![]() ![]() ![]() | ||||||
Method | ![]() ![]() | ||||||
![]() | Sintchak, M.D. / Fleming, M.A. / Futer, O. / Raybuck, S.A. / Chambers, S.P. / Caron, P.R. / Murcko, M.A. / Wilson, K.P. | ||||||
![]() | ![]() Title: Structure and mechanism of inosine monophosphate dehydrogenase in complex with the immunosuppressant mycophenolic acid. Authors: Sintchak, M.D. / Fleming, M.A. / Futer, O. / Raybuck, S.A. / Chambers, S.P. / Caron, P.R. / Murcko, M.A. / Wilson, K.P. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 165.9 KB | Display | ![]() |
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PDB format | ![]() | 135.8 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Arichive directory | ![]() ![]() | HTTPS FTP |
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-Related structure data
Related structure data | |
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Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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1 | ![]()
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2 | ![]()
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Unit cell |
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Details | the biological assembly is a tetramer generated from chain A in the asymmetric unit by the operations: -x,-y,z; -y,x,z; y,-x,z |
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Components
#1: Protein | Mass: 55961.082 Da / Num. of mol.: 2 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() ![]() ![]() ![]() ![]() #2: Chemical | #3: Chemical | ![]() #4: Chemical | ![]() #5: Water | ChemComp-HOH / | ![]() |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 3.03 Å3/Da / Density % sol: 59.43 % | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Crystal grow![]() | Temperature: 298 K / Method: vapor diffusion, hanging drop / pH: 5.8 Details: PEG 6000, LiCl, MES, 1-methyl-2-pyrrolidinone, 2-mercaptoethanol, pH 5.8, VAPOR DIFFUSION, HANGING DROP, temperature 298K | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Crystal grow | *PLUS Temperature: 22 ℃ / pH: 8 / Method: vapor diffusion | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: ![]() |
Detector | Type: RIGAKU RAXIS IIC / Detector: IMAGE PLATE / Date: Oct 1, 1995 |
Radiation | Monochromator: Yale/MSC mirrors / Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength![]() |
Reflection | Resolution: 2.6→30 Å / Num. all: 40314 / Num. obs: 37492 / % possible obs: 93 % / Observed criterion σ(F): 1 / Observed criterion σ(I): 1 / Redundancy: 3.3 % / Rsym value: 5.2 |
Reflection shell | Resolution: 2.6→2.71 Å / % possible all: 80 |
Reflection | *PLUS % possible obs: 93 % / Num. measured all: 123246 / Rmerge(I) obs: 0.052 |
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Processing
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Refinement | Method to determine structure![]() ![]()
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Refinement step | Cycle: LAST / Resolution: 2.6→8 Å
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Refine LS restraints |
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LS refinement shell | Resolution: 2.6→2.71 Å
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Software | *PLUS Name: ![]() | |||||||||||||||||||||||||
Refinement | *PLUS Highest resolution: 2.6 Å / Lowest resolution: 8 Å / σ(F): 1 / % reflection Rfree: 10 % / Rfactor obs: 0.217 | |||||||||||||||||||||||||
Solvent computation | *PLUS | |||||||||||||||||||||||||
Displacement parameters | *PLUS | |||||||||||||||||||||||||
Refine LS restraints | *PLUS
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LS refinement shell | *PLUS Rfactor Rfree: 0.317 / % reflection Rfree: 11 % / Rfactor Rwork: 0.276 |