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Yorodumi- PDB-1dz7: Solution structure of the a-subunit of human chorionic gonadotrop... -
+Open data
-Basic information
Entry | Database: PDB / ID: 1dz7 | ||||||
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Title | Solution structure of the a-subunit of human chorionic gonadotropin [modeled without carbohydrate residues] | ||||||
Components | CHORIONIC GONADOTROPINHuman chorionic gonadotropin | ||||||
Keywords | GLYCOPROTEIN / CHORIONIC GONADOTROPIN / CHORIONIC GONADOTROPIN FREE A SUBUNIT / GLYCOPROTEIN STRUCTURE / CYSTINE KNOT / XPLOR | ||||||
Function / homology | Function and homology information follicle-stimulating hormone activity / follicle-stimulating hormone complex / pituitary gonadotropin complex / luteinizing hormone secretion / follicle-stimulating hormone secretion / positive regulation of steroid biosynthetic process / Thyroxine biosynthesis / Mineralocorticoid biosynthesis / Hormone ligand-binding receptors / Glycoprotein hormones ...follicle-stimulating hormone activity / follicle-stimulating hormone complex / pituitary gonadotropin complex / luteinizing hormone secretion / follicle-stimulating hormone secretion / positive regulation of steroid biosynthetic process / Thyroxine biosynthesis / Mineralocorticoid biosynthesis / Hormone ligand-binding receptors / Glycoprotein hormones / Reactions specific to the complex N-glycan synthesis pathway / Androgen biosynthesis / follicle-stimulating hormone signaling pathway / negative regulation of organ growth / thyroid hormone generation / regulation of signaling receptor activity / organ growth / thyroid gland development / TFAP2 (AP-2) family regulates transcription of growth factors and their receptors / hormone-mediated signaling pathway / hormone activity / Golgi lumen / G alpha (s) signalling events / positive regulation of cell migration / G protein-coupled receptor signaling pathway / positive regulation of cell population proliferation / positive regulation of transcription by RNA polymerase II / extracellular space / extracellular region Similarity search - Function | ||||||
Biological species | HOMO SAPIENS (human) | ||||||
Method | SOLUTION NMR / DG, SA | ||||||
Authors | Erbel, P.J.A. / Karimi-Nejad, Y. / De Beer, T. / Boelens, R. / Kamerling, J.P. / Vliegenthart, J.F.G. | ||||||
Citation | Journal: Eur.J.Biochem. / Year: 1999 Title: Solution structure of the alpha-subunit of human chorionic gonadotropin. Authors: Erbel, P.J. / Karimi-Nejad, Y. / De Beer, T. / Boelens, R. / Kamerling, J.P. / Vliegenthart, J.F. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1dz7.cif.gz | 727.6 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1dz7.ent.gz | 624.5 KB | Display | PDB format |
PDBx/mmJSON format | 1dz7.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/dz/1dz7 ftp://data.pdbj.org/pub/pdb/validation_reports/dz/1dz7 | HTTPS FTP |
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-Related structure data
Related structure data | |
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Similar structure data |
-Links
-Assembly
Deposited unit |
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NMR ensembles |
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-Components
#1: Protein | Mass: 10217.769 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Details: ISOLATED FROM URINE OF PREGNANT WOMEN / Source: (natural) HOMO SAPIENS (human) / References: UniProt: P01215 |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR |
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NMR details | Text: STRUCTURAL STATISTICS FOR THE FAMILY OF 27 AHCG CONFORMERS EXCLUDE THE FLEXIBLE LOOP AND ENDS, SEGMENTS 1-10, 29-58 AND 85-92 (SEE REFERENCE) |
-Sample preparation
Details | Contents: 90% WATER/10% D2O |
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Sample conditions | Ionic strength: 100 mM / pH: 5.1 / Temperature: 328 K |
Crystal grow | *PLUS Method: other / Details: NMR |
-NMR measurement
NMR spectrometer |
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-Processing
NMR software |
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Refinement | Method: DG, SA / Software ordinal: 1 Details: SPECIAL REFINEMENT PROCEDURE TO OPTIMIZE CONVERGENCE RATE OF THE CYSTINE KNOT FORMATION | ||||||||||||
NMR ensemble | Conformers calculated total number: 100 / Conformers submitted total number: 27 |