+Open data
-Basic information
Entry | Database: PDB / ID: 1hrp | |||||||||
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Title | CRYSTAL STRUCTURE OF HUMAN CHORIONIC GONADOTROPIN | |||||||||
Components | (HUMAN CHORIONIC GONADOTROPIN) x 2 | |||||||||
Keywords | HORMONE | |||||||||
Function / homology | Function and homology information follicle-stimulating hormone activity / follicle-stimulating hormone complex / pituitary gonadotropin complex / luteinizing hormone secretion / follicle-stimulating hormone secretion / positive regulation of steroid biosynthetic process / Thyroxine biosynthesis / Mineralocorticoid biosynthesis / Hormone ligand-binding receptors / Glycoprotein hormones ...follicle-stimulating hormone activity / follicle-stimulating hormone complex / pituitary gonadotropin complex / luteinizing hormone secretion / follicle-stimulating hormone secretion / positive regulation of steroid biosynthetic process / Thyroxine biosynthesis / Mineralocorticoid biosynthesis / Hormone ligand-binding receptors / Glycoprotein hormones / Reactions specific to the complex N-glycan synthesis pathway / Androgen biosynthesis / follicle-stimulating hormone signaling pathway / female gamete generation / negative regulation of organ growth / thyroid hormone generation / regulation of signaling receptor activity / organ growth / thyroid gland development / TFAP2 (AP-2) family regulates transcription of growth factors and their receptors / hormone-mediated signaling pathway / hormone activity / Golgi lumen / cell-cell signaling / G alpha (s) signalling events / positive regulation of cell migration / G protein-coupled receptor signaling pathway / apoptotic process / positive regulation of cell population proliferation / signal transduction / positive regulation of transcription by RNA polymerase II / extracellular space / extracellular region / cytoplasm Similarity search - Function | |||||||||
Biological species | Homo sapiens (human) | |||||||||
Method | X-RAY DIFFRACTION / Resolution: 3 Å | |||||||||
Authors | Lapthorn, A.J. / Harris, D.C. / Isaacs, N.W. | |||||||||
Citation | Journal: Nature / Year: 1994 Title: Crystal structure of human chorionic gonadotropin. Authors: Lapthorn, A.J. / Harris, D.C. / Littlejohn, A. / Lustbader, J.W. / Canfield, R.E. / Machin, K.J. / Morgan, F.J. / Isaacs, N.W. #1: Journal: J.Biol.Chem. / Year: 1989 Title: Preliminary X-Ray Diffraction Analysis of Human Chorionic Gonadotropin Authors: Harris, D.C. / Machin, K.J. / Evin, G.M. / Morgan, F.J. / Isaacs, N.W. | |||||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1hrp.cif.gz | 44.7 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1hrp.ent.gz | 34.7 KB | Display | PDB format |
PDBx/mmJSON format | 1hrp.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/hr/1hrp ftp://data.pdbj.org/pub/pdb/validation_reports/hr/1hrp | HTTPS FTP |
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-Related structure data
Similar structure data |
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-Links
-Assembly
Deposited unit |
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1 |
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2 |
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Unit cell |
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-Components
#1: Protein | Mass: 10219.741 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Homo sapiens (human) / Tissue: placenta / References: UniProt: P01215 | ||
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#2: Protein | Mass: 15548.979 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source References: UniProt: P01233, UniProt: P0DN86*PLUS | ||
#3: Polysaccharide | Source method: isolated from a genetically manipulated source #4: Sugar | |
-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION |
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-Sample preparation
Crystal | Density Matthews: 3.9 Å3/Da / Density % sol: 68.46 % | |||||||||||||||||||||||||
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Crystal | *PLUS Density % sol: 62 % | |||||||||||||||||||||||||
Crystal grow | *PLUS Method: vapor diffusion, hanging dropDetails: taken from Harris, D.C., (1989) J. Biol. Chem., 264, 6705. PH range low: 4.5 / PH range high: 4.2 | |||||||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Radiation | Scattering type: x-ray |
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Radiation wavelength | Relative weight: 1 |
Reflection | Num. obs: 8365 / % possible obs: 94.9 % / Observed criterion σ(I): 2 |
Reflection | *PLUS Highest resolution: 3 Å / Rmerge(I) obs: 0.111 |
-Processing
Software |
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Refinement | Resolution: 3→10 Å / σ(F): 2 Details: IN FINAL CYCLES OF REFINEMENT, 1/2 THE STANDARD X-PLOR WEIGHT WAS APPLIED.
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Displacement parameters | Biso mean: 26.5 Å2 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refine analyze | Luzzati coordinate error obs: 0.5 Å | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 3→10 Å
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Refine LS restraints |
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Software | *PLUS Name: X-PLOR / Classification: refinement | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement | *PLUS Rfactor obs: 0.218 / Rfactor Rfree: 0.314 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Solvent computation | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refine LS restraints | *PLUS Type: x_angle_d / Dev ideal: 2.28 |