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Open data
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Basic information
Entry | Database: PDB / ID: 1ay9 | ||||||
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Title | WILD-TYPE UMUD' FROM E. COLI | ||||||
![]() | UMUD PROTEIN | ||||||
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Function / homology | ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() Similarity search - Function | ||||||
Biological species | ![]() ![]() ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Peat, T.S. / Frank, E.G. / Mcdonald, J.P. / Levine, A.S. / Woodgate, R. / Hendrickson, W.A. | ||||||
![]() | ![]() Title: The UmuD' protein filament and its potential role in damage induced mutagenesis. Authors: Peat, T.S. / Frank, E.G. / McDonald, J.P. / Levine, A.S. / Woodgate, R. / Hendrickson, W.A. #1: ![]() Title: Structure of the UmuD' Protein and its Regulation in Response to DNA Damage Authors: Peat, T.S. / Frank, E.G. / Mcdonald, J.P. / Levine, A.S. / Woodgate, R. / Hendrickson, W.A. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 49.6 KB | Display | ![]() |
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PDB format | ![]() | 35.9 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Arichive directory | ![]() ![]() | HTTPS FTP |
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-Related structure data
Related structure data | ![]() 1umuS S: Starting model for refinement |
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Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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1 | ![]()
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2 | ![]()
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Unit cell |
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Noncrystallographic symmetry (NCS) | NCS oper: (Code: given Matrix: (0.341469, 0.939004, -0.040869), Vector ![]() |
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Components
#1: Protein | Mass: 11667.270 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) ![]() ![]() ![]() References: UniProt: P04153, UniProt: P0AG11*PLUS, ![]() #2: Water | ChemComp-HOH / | ![]() |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.48 Å3/Da / Density % sol: 47 % | ||||||||||||||||||||||||||||||||||||||||||
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Crystal grow![]() | pH: 6 / Details: 100MM CACODYLATE BUFFER PH 6.0 | ||||||||||||||||||||||||||||||||||||||||||
Crystal grow | *PLUS Temperature: 20 ℃ / pH: 5.8 / Method: vapor diffusion, hanging drop | ||||||||||||||||||||||||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Diffraction | Mean temperature: 277 K |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: FUJI / Detector: IMAGE PLATE / Date: Dec 1, 1990 |
Radiation | Monochromator: SINGLE CRYSTAL / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength![]() |
Reflection | Resolution: 3→15 Å / Num. obs: 4912 / % possible obs: 90 % / Observed criterion σ(I): 2 / Redundancy: 3.2 % |
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Processing
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Refinement | Method to determine structure![]() ![]() Starting model: PDB ENTRY 1UMU Resolution: 3→15 Å / Cross valid method: THROUGHOUT / σ(F): 2
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Displacement parameters | Biso mean: 10.7 Å2 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 3→15 Å
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Refine LS restraints |
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Refine LS restraints NCS | NCS model details: RESTRAINTS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
LS refinement shell | Resolution: 3→3.11 Å / Total num. of bins used: 10
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Xplor file |
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