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Structure paper

TitleStructural insights into dimerization and activation of the mGlu2-mGlu3 and mGlu2-mGlu4 heterodimers.
Journal, issue, pagesCell Res, Vol. 33, Issue 10, Page 762-774, Year 2023
Publish dateJun 8, 2023
AuthorsXinwei Wang / Mu Wang / Tuo Xu / Ye Feng / Qiang Shao / Shuo Han / Xiaojing Chu / Yechun Xu / Shuling Lin / Qiang Zhao / Beili Wu /
PubMed AbstractHeterodimerization of the metabotropic glutamate receptors (mGlus) has shown importance in the functional modulation of the receptors and offers potential drug targets for treating central nervous ...Heterodimerization of the metabotropic glutamate receptors (mGlus) has shown importance in the functional modulation of the receptors and offers potential drug targets for treating central nervous system diseases. However, due to a lack of molecular details of the mGlu heterodimers, understanding of the mechanisms underlying mGlu heterodimerization and activation is limited. Here we report twelve cryo-electron microscopy (cryo-EM) structures of the mGlu2-mGlu3 and mGlu2-mGlu4 heterodimers in different conformational states, including inactive, intermediate inactive, intermediate active and fully active conformations. These structures provide a full picture of conformational rearrangement of mGlu2-mGlu3 upon activation. The Venus flytrap domains undergo a sequential conformational change, while the transmembrane domains exhibit a substantial rearrangement from an inactive, symmetric dimer with diverse dimerization patterns to an active, asymmetric dimer in a conserved dimerization mode. Combined with functional data, these structures reveal that stability of the inactive conformations of the subunits and the subunit-G protein interaction pattern are determinants of asymmetric signal transduction of the heterodimers. Furthermore, a novel binding site for two mGlu4 positive allosteric modulators was observed in the asymmetric dimer interfaces of the mGlu2-mGlu4 heterodimer and mGlu4 homodimer, and may serve as a drug recognition site. These findings greatly extend our knowledge about signal transduction of the mGlus.
External linksCell Res / PubMed:37286794 / PubMed Central
MethodsEM (single particle)
Resolution2.8 - 3.7 Å
Structure data

EMDB-36165, PDB-8jcu:
Cryo-EM structure of mGlu2-mGlu3 heterodimer in presence of LY341495 (dimerization mode I)
Method: EM (single particle) / Resolution: 2.8 Å

EMDB-36166, PDB-8jcv:
Cryo-EM structure of mGlu2-mGlu3 heterodimer in presence of LY341495 (dimerization mode II)
Method: EM (single particle) / Resolution: 3.4 Å

EMDB-36167, PDB-8jcw:
Cryo-EM structure of mGlu2-mGlu3 heterodimer in presence of LY341495 and NAM563 (dimerization mode I)
Method: EM (single particle) / Resolution: 3.0 Å

EMDB-36168, PDB-8jcx:
Cryo-EM structure of mGlu2-mGlu3 heterodimer in presence of LY341495 and NAM563 (dimerization mode II)
Method: EM (single particle) / Resolution: 3.0 Å

EMDB-36169, PDB-8jcy:
Cryo-EM structure of mGlu2-mGlu3 heterodimer in presence of LY341495, NAM563, and LY2389575 (dimerization mode I)
Method: EM (single particle) / Resolution: 2.9 Å

EMDB-36170, PDB-8jcz:
Cryo-EM structure of mGlu2-mGlu3 heterodimer in presence of LY341495, NAM563, and LY2389575 (dimerization mode III)
Method: EM (single particle) / Resolution: 3.0 Å

EMDB-36171, PDB-8jd0:
Cryo-EM structure of mGlu2-mGlu3 heterodimer in presence of NAM563
Method: EM (single particle) / Resolution: 3.3 Å

EMDB-36172, PDB-8jd1:
Cryo-EM structure of mGlu2-mGlu3 heterodimer in Rco state
Method: EM (single particle) / Resolution: 3.7 Å

EMDB-36173, PDB-8jd2:
Cryo-EM structure of G protein-free mGlu2-mGlu3 heterodimer in Acc state
Method: EM (single particle) / Resolution: 2.8 Å

EMDB-36174, PDB-8jd3:
Cryo-EM structure of Gi1-bound mGlu2-mGlu3 heterodimer
Method: EM (single particle) / Resolution: 3.3 Å

EMDB-36175, PDB-8jd4:
Cryo-EM structure of G protein-free mGlu2-mGlu4 heterodimer in Acc state
Method: EM (single particle) / Resolution: 2.9 Å

EMDB-36176, PDB-8jd5:
Cryo-EM structure of Gi1-bound mGlu2-mGlu4 heterodimer
Method: EM (single particle) / Resolution: 3.6 Å

EMDB-36177, PDB-8jd6:
Cryo-EM structure of Gi1-bound metabotropic glutamate receptor mGlu4
Method: EM (single particle) / Resolution: 3.4 Å

EMDB-36221: Cryo-EM map of Gi-bound metabotropic glutamate receptor mGlu4 focused on TMD and G protein
Method: EM (single particle) / Resolution: 3.3 Å

EMDB-36222: Cryo-EM map of Gi1-bound metabotropic glutamate receptor mGlu4 focused on ECD
Method: EM (single particle) / Resolution: 2.9 Å

EMDB-36226: Cryo-EM map of Gi1-bound mGlu2-mGlu4 heterodimer focused on ECD
Method: EM (single particle) / Resolution: 2.9 Å

EMDB-36227: Cryo-EM map of Gi1-bound mGlu2-mGlu4 heterodimer focused on TMD and G protein
Method: EM (single particle) / Resolution: 3.4 Å

EMDB-36286: The consensus Cryo-EM map of Gi1-bound mGlu2-mGlu4 heterodimer
Method: EM (single particle) / Resolution: 3.6 Å

EMDB-36287: The consensus Cryo-EM map of Gi-bound metabotropic glutamate receptor mGlu4
Method: EM (single particle) / Resolution: 3.4 Å

Chemicals

ChemComp-Z99:
2-[(1S,2S)-2-carboxycyclopropyl]-3-(9H-xanthen-9-yl)-D-alanine / antidepressant, antagonist*YM / LY-341495

ChemComp-NAG:
2-acetamido-2-deoxy-beta-D-glucopyranose / N-Acetylglucosamine

ChemComp-CLR:
CHOLESTEROL / Cholesterol

ChemComp-J9R:
4-(1-methylpyrazol-4-yl)-7-[[(2~{S})-2-(trifluoromethyl)morpholin-4-yl]methyl]quinoline-2-carboxamide

ChemComp-GLU:
GLUTAMIC ACID / Glutamic acid

ChemComp-HZR:
1-butyl-3-chloranyl-4-(4-phenylpiperidin-1-yl)pyridin-2-one / ADX-71149

ChemComp-PEF:
DI-PALMITOYL-3-SN-PHOSPHATIDYLETHANOLAMINE / phospholipid*YM / Phosphatidylethanolamine

ChemComp-BQI:
5-methyl-N-(4-methylpyrimidin-2-yl)-4-(1H-pyrazol-4-yl)-1,3-thiazol-2-amine

ChemComp-BK0:
N-(3-chlorophenyl)pyridine-2-carboxamide

ChemComp-SEP:
PHOSPHOSERINE / Phosphoserine

Source
  • homo sapiens (human)
  • escherichia coli (E. coli)
KeywordsMEMBRANE PROTEIN / Complex structure / mGlu2-3 heterodimer / mGlu2-3 heterodimer in presence of NAM563 / mGlu2-mGlu3 heterodimer with Gi protein / mGlu2-mGlu4 heterodimer / Gi1-bound mGlu2-mGlu4 heterodimer / Gi-bound metabotropic glutamate receptor mGlu4

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