[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 1,787 items for (author: y. & zhang)

PDB-8qqk:
Cryo-EM structure of E. coli cytochrome bo3 quinol oxidase assembled in peptidiscs
Method: single particle / : Gao Y, Zhang Y, Hakke S, Peters PJ, Ravelli RBG

PDB-8hlp:
Cryo-EM structure of human high-voltage activated L-type calcium channel CaV1.2 (apo)
Method: single particle / : Wei Y, Yu Z, Zhao Y

PDB-8hma:
Cryo-EM structure of human high-voltage activated L-type calcium channel CaV1.2 in complex with tetrandrine (TET)
Method: single particle / : Wei Y, Yu Z, Zhao Y

PDB-8hmb:
Cryo-EM structure of human high-voltage activated L-type calcium channel CaV1.2 in complex with benidipine (BEN)
Method: single particle / : Wei Y, Yu Z, Zhao Y

PDB-8pn1:
CryoEM structure of Nal1 protein, allele SPIKE, from Oryza sativa japonica group
Method: single particle / : Huang LY, Rety S, Xi XG

PDB-8pn2:
CryoEM structure of Nal1 protein, allele IR64, from Oryza sativa indica cultivar
Method: single particle / : Huang LY, Rety S, Xi XG

PDB-8iaz:
Cryo-EM structure of the ISFba1 TnpB-reRNA-dsDNA complex
Method: single particle / : Yin M, Zhou F, Zhu Y, Huang Z

PDB-8w6c:
CryoEM structure of NaDC1 with Citrate
Method: single particle / : Chi X, Chen Y, Li Y, Dai L, Zhang Y, Shen Y, Chen Y, Shi T, Yang H, Wang Z, Yan R

PDB-8w6d:
CryoEM structure of NaDC1 in apo state
Method: single particle / : Chi X, Chen Y, Li Y, Zhang Y, Shen Y, Chen Y, Wang Z, Yan R

PDB-8w6g:
NaDC1 with inhibitor ACA
Method: single particle / : Chi X, Chen Y, Li Y, Zhang Y, Shen Y, Chen Y, Wang Z, Yan R

PDB-8w6h:
NaS1 with sulfate - IN/IN state
Method: single particle / : Chi X, Chen Y, Li Y, Zhang Y, Shen Y, Chen Y, Wang Z, Yan R

PDB-8w6n:
NaS1 with sulfate in IN/OUT state
Method: single particle / : Chi X, Chen Y, Li Y, Zhang Y, Shen Y, Chen Y, Wang Z, Yan R

PDB-8w6o:
NaS1 in IN/IN state
Method: single particle / : Chi X, Chen Y, Li Y, Zhang Y, Shen Y, Chen Y, Wang Z, Yan R

PDB-8w6t:
NaS1 in IN/OUT state
Method: single particle / : Chi X, Chen Y, Li Y, Zhang Y, Shen Y, Chen Y, Wang Z, Yan R

PDB-8wh5:
Structure of DDM1-nucleosome complex in the apo state
Method: single particle / : Liu Y, Zhang Z, Du J

PDB-8wh8:
Structure of DDM1-nucleosome complex in ADP state
Method: single particle / : Liu Y, Zhang Z, Du J

PDB-8wh9:
Structure of DDM1-nucleosome complex in ADP-BeFx state
Method: single particle / : Liu Y, Zhang Z, Du J

PDB-8wha:
Structure of DDM1-nucleosome complex in the ADP-BeFx state with DDM1 bound to SHL2 and SHL-2
Method: single particle / : Liu Y, Zhang Z, Du J

PDB-8whb:
Structure of nucleosome core particle of Arabidopsis thaliana
Method: single particle / : Liu Y, Zhang Z, Du J

PDB-8xaj:
Cryo-EM structure of OSCA1.2-liposome-inside-in open state
Method: single particle / : Zhang Y, Han Y

PDB-8xng:
Cryo-EM structure of OSCA1.2-liposome-inside-out closed state
Method: single particle / : Zhang Y, Han Y

PDB-8xry:
Cryo-EM structure of OSCA3.1-1.1ver(Y367N-G454S-Y458I)-open/open state
Method: single particle / : Zhang Y, Han Y

PDB-8xs0:
Cryo-EM structure of OSCA3.1-1.1ver(Y367N-G454S-Y458I)-open/'desensitized' state
Method: single particle / : Zhang Y, Han Y

PDB-8xs4:
Cryo-EM structure of OSCA1.2-DOPC-1:20-contracted1 state
Method: single particle / : Zhang Y, Han Y

PDB-8xs5:
Cryo-EM structure of OSCA1.2-DOPC-1:20-contracted2 state
Method: single particle / : Zhang Y, Han Y

PDB-8xvx:
Cryo-EM structure of OSCA1.2-DOPC-1:20-expanded state
Method: single particle / : Zhang Y, Han Y

PDB-8xvy:
Cryo-EM structure of OSCA3.1-2E(R611E-R619E)-closed/open state
Method: single particle / : Zhang Y, Han Y

PDB-8xvz:
Cryo-EM structure of OSCA3.1-2E(R611E-R619E)-closed/'desensitized' state
Method: single particle / : Zhang Y, Han Y

PDB-8xw0:
Cryo-EM structure of OSCA3.1-GDN state
Method: single particle / : Zhang Y, Han Y

PDB-8xw1:
Cryo-EM structure of OSCA1.2-V335W-DDM state
Method: single particle / : Zhang Y, Han Y

PDB-8xw2:
Cryo-EM structure of OSCA1.2-DOPC-1:50-contracted state
Method: single particle / : Zhang Y, Han Y

PDB-8xw3:
Cryo-EM structure of OSCA1.2-DOPC-1:50-expanded state
Method: single particle / : Zhang Y, Han Y

PDB-8xw4:
Cryo-EM structure of TMEM63B-Digitonin state
Method: single particle / : Zhang Y, Han Y

PDB-8wy8:
Cryo-EM structure of DSR2 apo complex
Method: single particle / : Zhang JT, Jia N, Liu XY

PDB-8wy9:
Cryo-EM structure of DSR2 apo (partial) complex
Method: single particle / : Zhang JT, Jia N, Liu XY

PDB-8wya:
Cryo-EM structure of DSR2-tube complex
Method: single particle / : Zhang JT, Jia N, Liu XY

PDB-8wyb:
Cryo-EM structure of DSR2 (H171A)-tube-NAD+ complex
Method: single particle / : Zhang JT, Jia N, Liu XY

PDB-8wyc:
Cryo-EM structure of DSR2 (H171A)-tube-NAD+ (partial) complex
Method: single particle / : Zhang JT, Jia N, Liu XY

PDB-8wyd:
Cryo-EM structure of DSR2-DSAD1 complex
Method: single particle / : Zhang JT, Jia N, Liu XY

PDB-8wye:
Cryo-EM structure of DSR2-DSAD1 (partial) complex
Method: single particle / : Zhang JT, Jia N, Liu XY

PDB-8wyf:
Cryo-EM structure of DSR2-DSAD1-NAD+ (partial) complex
Method: single particle / : Zhang JT, Jia N, Liu XY

PDB-8wtz:
potassium outward rectifier channel SKOR
Method: single particle / : Gao X, Sun T, Lu Y, Jia Y, Xu X, Zhang Y, Fu P, Yang G

PDB-8wui:
SKOR D312N L271P double mutation
Method: single particle / : Gao X, Sun T, Lu Y, Jia Y, Xu X, Zhang Y, Fu P, Yang G

PDB-8io3:
Cryo-EM structure of human HCN3 channel with cilobradine
Method: single particle / : Yu B, Lu QY, Li J, Zhang J

PDB-8inz:
Cryo-EM structure of human HCN3 channel in apo state
Method: single particle / : Yu B, Lu QY, Li J, Zhang J

PDB-8vy7:
CryoEM structure of Gi-coupled TAS2R14 with cholesterol and an intracellular tastant
Method: single particle / : Kim Y, Gumpper RH, Roth BL

PDB-8vy9:
CryoEM structure of Ggust-coupled TAS2R14 with cholesterol and an intracellular tastant
Method: single particle / : Kim Y, Gumpper RH, Roth BL

PDB-8k66:
Cryo-EM structure of Oryza sativa HKT2;1 at 2.5 angstrom
Method: single particle / : Wang X, Shen X, Qu Y, Wang C, Shen H

PDB-8k69:
Cryo-EM structure of Oryza sativa HKT2;2/1 at 2.3 angstrom
Method: single particle / : Wang X, Shen X, Qu Y, Wang C, Shen H

PDB-8xv2:
Thiamine-bound human SLC19A3
Method: single particle / : Dang Y, Wang GP, Zhang Z

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more