[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 60 items for (author: tu & lh)

EMDB-17819:
XBB 1.0 RBD bound to P4J15 (Local)
Method: single particle / : Duhoo Y, Lau K

EMDB-17849:
XBB 1.0 RBD bound to P4J15 (Global)
Method: single particle / : Duhoo Y, Lau K

EMDB-17850:
SARS-CoV-2 XBB 1.0 closed conformation.
Method: single particle / : Duhoo Y, Lau K

PDB-8pq2:
XBB 1.0 RBD bound to P4J15 (Local)
Method: single particle / : Duhoo Y, Lau K

PDB-8psd:
SARS-CoV-2 XBB 1.0 closed conformation.
Method: single particle / : Duhoo Y, Lau K

EMDB-29530:
SARS-CoV-2 XBB.1 spike RBD bound to the human ACE2 ectodomain and the S309 neutralizing antibody Fab fragment
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-29531:
SARS-CoV-2 BQ.1.1 spike RBD bound to the human ACE2 ectodomain and the S309 neutralizing antibody Fab fragment
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-40240:
SARS-CoV-2 BN.1 spike RBD bound to the human ACE2 ectodomain and the S309 neutralizing antibody Fab fragment
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

PDB-8fxb:
SARS-CoV-2 XBB.1 spike RBD bound to the human ACE2 ectodomain and the S309 neutralizing antibody Fab fragment
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

PDB-8fxc:
SARS-CoV-2 BQ.1.1 spike RBD bound to the human ACE2 ectodomain and the S309 neutralizing antibody Fab fragment
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

PDB-8s9g:
SARS-CoV-2 BN.1 spike RBD bound to the human ACE2 ectodomain and the S309 neutralizing antibody Fab fragment
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-28558:
SARS-CoV-2 BA.1 spike ectodomain trimer in complex with the S2X324 neutralizing antibody Fab fragment (local refinement of the RBD and S2X324)
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-28559:
SARS-CoV-2 Omicron BA.1 spike ectodomain trimer in complex with the S2X324 neutralizing antibody Fab fragment
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

PDB-8erq:
SARS-CoV-2 BA.1 spike ectodomain trimer in complex with the S2X324 neutralizing antibody Fab fragment (local refinement of the RBD and S2X324)
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

PDB-8err:
SARS-CoV-2 Omicron BA.1 spike ectodomain trimer in complex with the S2X324 neutralizing antibody Fab fragment
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-27939:
Structure of the human ACE2 receptor in complex with antibody Fab fragment, 05B04
Method: single particle / : Barnes CO

EMDB-27488:
Cryo-EM structure of cystinosin in a cytosol-open state
Method: single particle / : Schmiege P, Li X

EMDB-27489:
Cryo-EM structure of cystinosin in a lumen-open state
Method: single particle / : Schmiege P, Li X

EMDB-27490:
Cryo-EM structure of cystine-bound cystinosin in a lumen-open state
Method: single particle / : Schmiege P, Li X

EMDB-27492:
Cryo-EM structure of cystinosin N288K mutant in a cytosol-open state at pH5.0
Method: single particle / : Schmiege P, Li X

EMDB-27493:
Cryo-EM structure of cystinosin N288K mutant in a cytosol-open state at pH7.5
Method: single particle / : Schmiege P, Li X

PDB-8dke:
Cryo-EM structure of cystinosin in a cytosol-open state
Method: single particle / : Schmiege P, Li X

PDB-8dki:
Cryo-EM structure of cystinosin in a lumen-open state
Method: single particle / : Schmiege P, Li X

PDB-8dkm:
Cryo-EM structure of cystine-bound cystinosin in a lumen-open state
Method: single particle / : Schmiege P, Li X

PDB-8dkw:
Cryo-EM structure of cystinosin N288K mutant in a cytosol-open state at pH5.0
Method: single particle / : Schmiege P, Li X

PDB-8dkx:
Cryo-EM structure of cystinosin N288K mutant in a cytosol-open state at pH7.5
Method: single particle / : Schmiege P, Li X

EMDB-14777:
Cryo-EM structure of archaic chaperone-usher Csu pilus of Acinetobacter baumannii
Method: helical / : Pakharukova N, Malmi H, Tuittila M, Paavilainen S, Ghosal D, Chang YW, Jensen GJ, Zavialov AV

PDB-7zl4:
Cryo-EM structure of archaic chaperone-usher Csu pilus of Acinetobacter baumannii
Method: helical / : Pakharukova N, Malmi H, Tuittila M, Paavilainen S, Ghosal D, Chang YW, Jensen GJ, Zavialov AV

EMDB-24378:
5-HT2AR bound to a novel agonist in complex with a mini-Gq protein and an active-state stabilizing single-chain variable fragment (scFv16) obtained by cryo-electron microscopy (cryoEM)
Method: single particle / : Barros-Alvarez X, Kim K, Panova O, Roth BL, Skiniotis G

PDB-7ran:
5-HT2AR bound to a novel agonist in complex with a mini-Gq protein and an active-state stabilizing single-chain variable fragment (scFv16) obtained by cryo-electron microscopy (cryoEM)
Method: single particle / : Barros-Alvarez X, Kim K, Panova O, Roth BL, Skiniotis G

PDB-7ko8:
Cryo-EM structure of the mature and infective Mayaro virus
Method: single particle / : Riberio-Filho HV, Coimbra LD, Cassago A, Rocha RPF, Padilha ACM, Schatz M, van Heel MG, Portugal RV, Trivella DBB, de Oliveira PSL, Marques RE

EMDB-22961:
Cryo-EM structure of the mature and infective Mayaro virus
Method: single particle / : Ribeiro Filho H, Coimbra LD, Cassago A, Rocha RFP, Padilha AC, Trivella DBB, Schatz M, Oliveira PSL, Portugal RV, Marques RE, van Heel M

EMDB-12067:
triplet microtubule from the proximal region of the pig sperm proximal centriole
Method: subtomogram averaging / : Leung MR, Zeev-Ben-Mordehai T

EMDB-12068:
singlet microtubules from the pig sperm endpiece
Method: subtomogram averaging / : Leung MR, Zeev-Ben-Mordehai T

EMDB-12069:
the central pair apparatus from pig sperm flagella
Method: subtomogram averaging / : Leung MR, Zeev-Ben-Mordehai T

EMDB-12070:
the 96-nm axonemal repeat from pig sperm flagella (whole population)
Method: subtomogram averaging / : Leung MR, Zeev-Ben-Mordehai T

EMDB-12071:
the 96-nm axonemal repeat from pig sperm flagella (+ODF class)
Method: subtomogram averaging / : Leung MR, Zeev-Ben-Mordehai T

EMDB-12072:
the 96-nm axonemal repeat from pig sperm flagella (-ODF class)
Method: subtomogram averaging / : Leung MR, Zeev-Ben-Mordehai T

EMDB-12076:
central pair apparatus from horse sperm flagella
Method: subtomogram averaging / : Leung MR, Zeev-Ben-Mordehai T

EMDB-12077:
singlet microtubules from the horse sperm endpiece
Method: subtomogram averaging / : Leung MR, Zeev-Ben-Mordehai T

EMDB-12078:
the 96-nm axonemal repeat from horse sperm flagella (whole population)
Method: subtomogram averaging / : Leung MR, Zeev-Ben-Mordehai T

EMDB-12079:
the 96-nm axonemal repeat from horse sperm flagella (+ODF class)
Method: subtomogram averaging / : Leung MR, Zeev-Ben-Mordehai T

EMDB-12131:
subtomogram average of the 96-nm axonemal repeat from horse sperm flagella (-ODF class)
Method: subtomogram averaging / : Leung MR, Zeev-Ben-Mordehai T

EMDB-12132:
singlet microtubules from the mouse sperm endpiece
Method: subtomogram averaging / : Leung MR, Zeev-Ben-Mordehai T

EMDB-12133:
the 96-nm axonemal repeat from mouse sperm flagella (whole population)
Method: subtomogram averaging / : Leung MR, Zeev-Ben-Mordehai T

EMDB-12134:
the 96-nm axonemal repeat from mouse sperm flagella (+ODF class)
Method: subtomogram averaging / : Leung MR, Zeev-Ben-Mordehai T

EMDB-12135:
the 96-nm axonemal repeat from mouse sperm flagella (-ODF class)
Method: subtomogram averaging / : Leung MR, Zeev-Ben-Mordehai T

EMDB-12136:
the central pair apparatus from mouse sperm flagella
Method: subtomogram averaging / : Leung MR, Zeev-Ben-Mordehai T

EMDB-21097:
Negative stain electron microscopy of PmPV2, a toxin member of the Membrane Attack Complex-Perforin (MACPF) from the eggs of Pomacea maculata
Method: single particle / : Otero LH, Brola TR, Giglio ML, Ituarte S, Dreon MS, Heras H

EMDB-10668:
Structure of human ribosome in classical-PRE state
Method: single particle / : Bhaskar V, Schenk AD, Cavadini S, von Loeffelholz O, Natchiar SK, Klaholz BP, Chao JA

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more