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Showing all 39 items for (author: shibata & k)
EMDB-35591: 
Human NLRP1 complexed with thioredoxin (focused map)
Method: single particle / : Zhang Z, Ohto U
EMDB-34412:
Cryo-EM structure of APOBEC3G-Vif complex
Method: single particle / : Kouno T, Shibata S, Hyun J, Kim TG, Wolf M
EMDB-35997:
Cryo-EM structure of APOBEC3G-Vif complex
Method: single particle / : Kouno T, Shibata S, Hyun J, Kim TG, Wolf M
EMDB-35998:
Cryo-EM structure of APOBEC3G-Vif complex
Method: single particle / : Kouno T, Shibata S, Hyun J, Kim TG, Wolf M
EMDB-35999:
Cryo-EM structure of APOBEC3G-Vif complex
Method: single particle / : Kouno T, Shibata S, Hyun J, Kim TG, Wolf M
PDB-8h0i:
Cryo-EM structure of APOBEC3G-Vif complex
Method: single particle / : Kouno T, Shibata S, Hyun J, Kim TG, Wolf M
PDB-8j62:
Cryo-EM structure of APOBEC3G-Vif complex
Method: single particle / : Kouno T, Shibata S, Hyun J, Kim TG, Wolf M
EMDB-32484:
Human NLRP1 complexed with thioredoxin
Method: single particle / : Zhang Z, Ohto U
PDB-7wge:
Human NLRP1 complexed with thioredoxin
Method: single particle / : Zhang Z, Ohto U, Shimizu T
EMDB-35625:
SARS-CoV-2 XBB.1 spike glycoprotein in complex with ACE2 (2-up state)
Method: single particle / : Anraku Y, Kita S, Yajima H, Sasaki J, Sasaki-Tabata K, Maenaka K, Hashiguchi T
EMDB-32094:
Cryo-EM structure of H2A-ubiquitinated nucleosome
Method: single particle / : Ohtomo H, Ito S, McKenzie NJ, Uckelmann M, Wakamori M, Ehara H, Tsunaka Y, Shibata M, Sekine S, Umehara T, Davidovich C, Koseki H, Nishimura Y
EMDB-32599:
Cryo-EM structure of tetrameric TLR3 in complex with dsRNA (90 bp)
Method: single particle / : Sakaniwa K, Ohto U
PDB-7wm4:
Cryo-EM structure of tetrameric TLR3 in complex with dsRNA (90 bp)
Method: single particle / : Sakaniwa K, Ohto U, Shimizu T
EMDB-35080:
Far-red light-harvesting complex of Antarctic alga Prasiola crispa
Method: single particle / : Kosugi M, Kawasaki M, Shibata Y, Moriya T, Adachi N, Senda T
PDB-8hw1:
Far-red light-harvesting complex of Antarctic alga Prasiola crispa
Method: single particle / : Kosugi M, Kawasaki M, Shibata Y, Moriya T, Adachi N, Senda T
EMDB-32377:
2.02 angstrom cryo-EM structure of the pump-like channelrhodopsin ChRmine
Method: single particle / : Kishi KE, Kim Y, Fukuda M, Yamashita K, Deisseroth K, Kato HE
EMDB-32378:
2.12 angstrom cryo-EM map of the pump-like channelrhodopsin ChRmine with Fab antibody fragment
Method: single particle / : Kishi KE, Kim Y, Fukuda M, Yamashita K, Deisseroth K, Kato HE
PDB-7w9w:
2.02 angstrom cryo-EM structure of the pump-like channelrhodopsin ChRmine
Method: single particle / : Kishi KE, Kim Y, Fukuda M, Yamashita K, Deisseroth K, Kato HE
EMDB-30353:
Split conformation 2 of CtHsp104 (Hsp104 from Chaetomium Thermophilum)
Method: single particle / : Inoue Y, Hanazono Y, Noi K, Kawamoto A, Kimatsuka M, Harada R, Takeda K, Iwamasa N, Shibata K, Noguchi K, Shigeta Y, Namba K, Ogura T, Miki K, Shinohara K, Yohda M
EMDB-30352:
Split conformation 1 of CtHsp104 (Hsp104 from Chaetomium Thermophilum)
Method: single particle / : Inoue Y, Hanazono Y, Noi K, Kawamoto A, Kimatsuka M, Harada R, Takeda K, Iwamasa N, Shibata K, Noguchi K, Shigeta Y, Namba K, Ogura T, Miki K, Shinohara K, Yohda M
EMDB-30349:
Staggered ring conformation of CtHsp104 (Hsp104 from Chaetomium Thermophilum)
Method: single particle / : Inoue Y, Hanazono Y, Noi K, Kawamoto A, Kimatsuka M, Harada R, Takeda K, Iwamasa N, Shibata K, Noguchi K, Shigeta Y, Namba K, Ogura T, Miki K, Shinohara K, Yohda M
PDB-7cg3:
Staggered ring conformation of CtHsp104 (Hsp104 from Chaetomium Thermophilum)
Method: single particle / : Inoue Y, Hanazono Y, Noi K, Kawamoto A, Kimatsuka M, Harada R, Takeda K, Iwamasa N, Shibata K, Noguchi K, Shigeta Y, Namba K, Ogura T, Miki K, Shinohara K, Yohda M
EMDB-12160:
Cilia from MOT7 deletion mutant of Chlamydomonas
Method: subtomogram averaging / : Noga A, Kutomi O, Yamamoto R, Nakagiri Y, Imai H, Obbineni JM, Zimmermann N, Ishikawa T, Wakabayashi K, Kon T, Inaba K
EMDB-12161:
Chlamydomonas cilia with MOT7-BCCP labeled
Method: subtomogram averaging / : Noga A, Kutomi O, Yamamoto R, Nakagiri Y, Imai H, Obbineni JM, Zimmermann N, Ishikawa T, Wakabayashi K, Kon T, Inaba K
EMDB-12162:
Microtubule doublet structure from WT Chlamydomonas as a control for MOT7 mutants
Method: subtomogram averaging / : Obbineni JM, Kutomi O, Yamamoto R, Nakagiri Y, Imai H, Noga A, Zimmermann N, Ishikawa T, Wakabayashi K, Kon T, Inaba K
EMDB-0999:
Cryo-EM reconstruction of TLR7/Cpd-3 (SM-394830) complex in closed form
Method: single particle / : Zhang Z, Ohto U, Shimizu T
EMDB-1000:
Cryo-EM reconstruction of TLR7/Cpd-6 (DSR-139293) complex in closed form
Method: single particle / : Zhang Z, Ohto U, Shimizu T
EMDB-30000:
Cryo-EM reconstruction of TLR7/Cpd-6 (DSR-139293) complex in open form
Method: single particle / : Zhang Z, Ohto U, Shimizu T
EMDB-30001:
Cryo-EM reconstruction of TLR7/Cpd-7 (DSR-139970) complex in open form
Method: single particle / : Zhang Z, Ohto U, Shimizu T
EMDB-30002:
Cryo-EM structure of TLR7/Cpd-7 (DSR-139970) complex in open form
Method: single particle / : Zhang Z, Ohto U, Shimizu T
PDB-6lw1:
Cryo-EM structure of TLR7/Cpd-7 (DSR-139970) complex in open form
Method: single particle / : Zhang Z, Ohto U, Shimizu T
PDB-6kmf:
FimA type V pilus from P.gingivalis
Method: single particle / : Shibata S, Shoji M, Matsunami H, Matthews M, Imada K, Nakayama K, Wolf M
EMDB-9909:
Salmonella hook in curved state - unsymmetrized cryo-EM map
Method: single particle / : Shibata S, Matsunami H
PDB-6k3i:
Salmonella hook in curved state - 66 subunit models
Method: single particle / : Shibata S, Matsunami H, Wolf M, Aizawa S
EMDB-6876:
Cryo-EM structure of Methanoccus maripaludis archaellum
Method: helical / : Meshcheryakov VA, Shibata S, Schreiber MT, Villar-Briones A, Jarrell KF, Aizawa S, Wolf M, Kurumizaka H
PDB-5z1l:
Cryo-EM structure of Methanoccus maripaludis archaellum
Method: helical / : Meshcheryakov VA, Shibata S, Schreiber MT, Villar-Briones A, Jarrell KF, Aizawa S, Wolf M
EMDB-6312:
Ciliary microtubule doublet by single particle analysis
Method: single particle / : Maheshwari A, Obbineni JM, Bui KH, Shibata K, Toyoshima Y, Ishikawa T
PDB-3jao:
Ciliary microtubule doublet
Method: single particle / : Maheshwari A, Obbineni JM, Bui KH, Shibata K, Toyoshima YY, Ishikawa T
wwPDB to switch to version 3 of the EMDB data model
