[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing all 47 items for (author: mogk & a)

EMDB-18062:
III2-IV1 respiratory supercomplex from S. pombe
Method: single particle / : Moe A, Brzezinski P

EMDB-18063:
Local refinement of CIII2 from S. pombe
Method: single particle / : Moe A, Brzezinski P

EMDB-18064:
Local refinement of CIV from S. pombe
Method: single particle / : Moe A, Brzezinski P

PDB-8q1b:
III2-IV1 respiratory supercomplex from S. pombe
Method: single particle / : Moe A, Brzezinski P

EMDB-4621:
Two-Step Activation Mechanism of the ClpB Disaggregase for Sequential Substrate Threading by the Main ATPase Motor.
Method: single particle / : Deville C, Saibil HR

EMDB-4622:
E. coli ClpB (DWB and K476C mutant) bound to casein - middle domain conformation 1
Method: single particle / : Deville C, Saibil HR

EMDB-4623:
E. coli ClpB (DWB and K476C mutant) bound to casein - middle domain conformation 2
Method: single particle / : Deville C, Saibil HR

EMDB-4624:
ClpB (DWB and K476C mutant) bound to casein in presence of ATPgammaS - state KC-1
Method: single particle / : Deville C, Saibil HR

EMDB-4625:
E. coli ClpB (DWB and K476C mutant) bound to casein - state KC-2
Method: single particle / : Deville C, Saibil HR

EMDB-4626:
ClpB (DWB and K476C mutant) bound to casein in presence of ATPgammaS - state KC-2A
Method: single particle / : Deville C, Saibil HR

EMDB-4627:
ClpB (DWB and K476C mutant) bound to casein in presence of ATPgammaS - state KC-2B
Method: single particle / : Deville C, Saibil HR

EMDB-4940:
ClpB (DWB mutant) bound to casein in presence of ATPgammaS - state WT-1
Method: single particle / : Deville C, Saibil HR

EMDB-4941:
ClpB (DWB mutant) bound to casein in presence of ATPgammaS - state WT-2A
Method: single particle / : Deville C, Saibil HR

EMDB-4942:
ClpB (DWB mutant) bound to casein in presence of ATPgammaS - state WT-2B
Method: single particle / : Deville C, Saibil HR

PDB-6qs4:
Two-Step Activation Mechanism of the ClpB Disaggregase for Sequential Substrate Threading by the Main ATPase Motor.
Method: single particle / : Deville C, Saibil HR

PDB-6qs6:
ClpB (DWB and K476C mutant) bound to casein in presence of ATPgammaS - state KC-1
Method: single particle / : Deville C, Saibil HR

PDB-6qs7:
ClpB (DWB and K476C mutant) bound to casein in presence of ATPgammaS - state KC-2A
Method: single particle / : Deville C, Saibil HR

PDB-6qs8:
ClpB (DWB and K476C mutant) bound to casein in presence of ATPgammaS - state KC-2B
Method: single particle / : Deville C, Saibil HR

PDB-6rn2:
ClpB (DWB mutant) bound to casein in presence of ATPgammaS - state WT-1
Method: single particle / : Deville C, Saibil HR

PDB-6rn3:
ClpB (DWB mutant) bound to casein in presence of ATPgammaS - state WT-2A
Method: single particle / : Deville C, Saibil HR

PDB-6rn4:
ClpB (DWB mutant) bound to casein in presence of ATPgammaS - state WT-2B
Method: single particle / : Deville C, Saibil HR

EMDB-3894:
S.aureus ClpC resting state, C2 symmetrised
Method: single particle / : Carroni M, Mogk A

EMDB-3895:
S.aureus ClpC resting state, asymmetric map
Method: single particle / : Carroni M, Mogk A, Bukau B, Franke K

EMDB-3897:
Structure of S.aureus ClpC in complex with MecA
Method: single particle / : Carroni M, Mogk A, Bukau B, Franke K

PDB-6em8:
S.aureus ClpC resting state, C2 symmetrised
Method: single particle / : Carroni M, Mogk A

PDB-6em9:
S.aureus ClpC resting state, asymmetric map
Method: single particle / : Carroni M, Mogk A, Bukau B, Franke K

PDB-6emw:
Structure of S.aureus ClpC in complex with MecA
Method: single particle / : Carroni M, Mogk A, Bukau B, Franke K

EMDB-3776:
Cryo EM structure of the bacterial disaggregase ClpB (BAP form, DWB mutant), in the ATPgammaS state, bound to the model substrate casein
Method: single particle / : Deville C, Carroni M, Franke KB, Topf M, Bukau B, Mogk A, Saibil HR

EMDB-3777:
Cryo EM structure of the bacterial disaggregase ClpB (BAP form, DWB mutant), in the ATPgammaS state
Method: single particle / : Deville C, Carroni M, Franke KB, Topf M, Bukau B, Mogk A, Saibil HR

PDB-5ofo:
Cryo EM structure of the E. coli disaggregase ClpB (BAP form, DWB mutant), in the ATPgammaS state, bound to the model substrate casein
Method: single particle / : Deville C, Carroni M, Franke KB, Topf M, Bukau B, Mogk A, Saibil HR

PDB-5og1:
Cryo EM structure of the E. coli disaggregase ClpB (BAP form, DWB mutant), in the ATPgammaS state
Method: single particle / : Deville C, Carroni M, Franke KB, Topf M, Bukau B, Mogk A, Saibil HR

EMDB-3094:
Electron negative stain tomography of alpha-synuclein amyloid fibrils
Method: electron tomography / : Gao X, Carroni M, Nussbaum-Krammer C, Mogk A, Nillegoda NB, Szlachcic A, Guilbride DL, Saibil HR, Mayer MP, Bukau B

EMDB-3095:
Electron negative stain tomography of alpha-synuclein amyloid fibrils treated with the Hsc70/DNAJB1/Apg2 chaperone system
Method: electron tomography / : Gao X, Carroni M, Nussbaum-Krammer C, Mogk A, Nillegoda NB, Szlachcic A, Guilbride DL, Saibil HR, Mayer MP, Bukau B

EMDB-2524:
Cryo EM structure of the contractile Type Six Secretion System VipA/B complex
Method: helical / : Kube S, Kapitein N, Zimniak T, Herzog F, Mogk A, Wendler P

EMDB-2525:
Cryo EM structure of the contractile Type Six Secretion System VipA/B complex
Method: helical / : Kube S, Kapitein N, Zimniak T, Herzog F, Mogk A, Wendler P

PDB-4d2q:
Negative-stain electron microscopy of E. coli ClpB mutant E432A (BAP form bound to ClpP)
Method: single particle / : Carroni M, Kummer E, Oguchi Y, Clare DK, Wendler P, Sinning I, Kopp J, Mogk A, Bukau B, Saibil HR

PDB-4d2u:
Negative-stain electron microscopy of E. coli ClpB (BAP form bound to ClpP)
Method: single particle / : Carroni M, Kummer E, Oguchi Y, Clare DK, Wendler P, Sinning I, Kopp J, Mogk A, Bukau B, Saibil HR

PDB-4d2x:
Negative-stain electron microscopy of E. coli ClpB of Y503D hyperactive mutant (BAP form bound to ClpP)
Method: single particle / : Carroni M, Kummer E, Oguchi Y, Clare DK, Wendler P, Sinning I, Kopp J, Mogk A, Bukau B, Saibil HR

EMDB-2555:
Negative-stain electron microscopy of E. coli ClpB mutant E432A (BAP form bound to ClpP)
Method: single particle / : Carroni M, Kummer E, Oguchi Y, Clare DK, Wendler P, Sinning I, Kopp J, Mogk A, Bukau B, Saibil HR

EMDB-2556:
Negative-stain electron microscopy of E. coli ClpB mutant E432A (BAP form bound to ClpP)
Method: single particle / : Carroni M, Kummer E, Oguchi Y, Wendler P, Sinning I, Kopp J, Mogk A, Bukau B, Saibil HR

EMDB-2557:
Negative-stain electron microscopy of E. coli ClpB (BAP form bound to ClpP)
Method: single particle / : Carroni M, Kummer E, Oguchi Y, Clare DK, Wendler P, Sinning I, Kopp J, Mogk A, Bukau B, Saibil HR

EMDB-2558:
Negative-stain electron microscopy of E. coli ClpB (BAP form bound to ClpP)
Method: single particle / : Carroni M, Kummer E, Oguchi Y, Clare DK, Wendler P, Sinning I, Kopp J, Mogk A, Bukau B, Saibil HR

EMDB-2559:
Negative-stain electron microscopy of E. coli ClpB (BAP form bound to ClpP)
Method: single particle / : Carroni M, Kummer E, Oguchi Y, Clare DK, Wendler P, Sinning I, Kopp J, Mogk A, Bukau B, Saibil HR

EMDB-2560:
Negative-stain electron microscopy of E. coli ClpB (BAP form bound to ClpP)
Method: single particle / : Carroni M, Kummer E, Oguchi Y, Clare DK, Wendler P, Sinning I, Kopp J, Mogk A, Bukau B, Saibil HR

EMDB-2561:
Negative-stain electron microscopy of Hsp104 (HAP form bound to ClpP)
Method: single particle / : Carroni M, Kummer E, Oguchi Y, Clare DK, Wendler P, Sinning I, Kopp J, Mogk A, Bukau B, Saibil HR

EMDB-2562:
Cryo electron microscopy of E. coli ClpB DWB mutant (BAP form bound to ClpP)
Method: single particle / : Carroni M, Kummer E, Oguchi Y, Clare DK, Wendler P, Sinning I, Kopp J, Mogk A, Bukau B, Saibil HR

EMDB-2563:
Cryo electron microscopy of E. coli ClpB
Method: single particle / : Carroni M, Kummer E, Oguchi Y, Clare DK, Wendler P, Sinning I, Kopp J, Mogk A, Bukau B, Saibil HR

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more