[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing all 50 items for (author: leiman & pg)

EMDB-29383:
Structure of baseplate with receptor binding complex of Agrobacterium phage Milano
Method: single particle / : Sonani RR, Leiman PG, Wang F, Kreutzberger MAB, Sebastian A, Esteves NC, Kelly RJ, Scharf B, Egelman EH

EMDB-29353:
Structure of Agrobacterium tumefaciens bacteriophage Milano curved tail
Method: single particle / : Sonani RR, Leiman PG, Wang F, Kreutzberger MAB, Sebastian A, Esteves NC, Kelly RJ, Scharf B, Egelman EH

EMDB-29354:
Structure of Agrobacterium tumefaciens bacteriophage Milano contracted tail-tube
Method: helical / : Sonani RR, Leiman PG, Wang F, Kreutzberger MAB, Sebastian A, Esteves NC, Kelly RJ, Scharf B, Egelman EH

EMDB-29355:
Structure of Agrobacterium tumefaciens bacteriophage Milano contracted tail-sheath
Method: helical / : Sonani RR, Leiman PG, Wang F, Kreutzberger MAB, Sebastian A, Esteves NC, Kelly RJ, Scharf B, Egelman EH

EMDB-29500:
Portal assembly of Agrobacterium phage Milano
Method: single particle / : Sonani RR, Wang F, Esteves NC, Kelly RJ, Sebastian A, Kreutzberger MAB, Leiman PG, Scharf BE, Egelman EH

EMDB-29501:
Collar sheath structure of Agrobacterium phage Milano
Method: single particle / : Sonani RR, Wang F, Esteves NC, Kelly RJ, Sebastian A, Kreutzberger MAB, Leiman PG, Scharf BE, Egelman EH

EMDB-29503:
Neck structure of Agrobacterium phage Milano, C3 symmetry
Method: single particle / : Sonani RR, Wang F, Esteves NC, Kelly RJ, Sebastian A, Kreutzberger MAB, Leiman PG, Scharf BE, Egelman EH

EMDB-29504:
Structure of neck and portal vertex of Agrobacterium phage Milano, C5 symmetry
Method: single particle / : Sonani RR, Wang F, Esteves NC, Kelly RJ, Sebastian A, Kreutzberger MAB, Leiman PG, Scharf BE, Egelman EH

EMDB-29512:
Structure of tail-neck junction of Agrobacterium phage Milano
Method: single particle / : Sonani RR, Wang F, Esteves NC, Kelly RJ, Sebastian A, Kreutzberger MAB, Leiman PG, Scharf BE, Egelman EH

EMDB-29540:
Structure of capsid of Agrobacterium phage Milano
Method: single particle / : Sonani RR, Wang F, Esteves NC, Kelly RJ, Sebastian A, Kreutzberger MAB, Leiman PG, Scharf BE, Egelman EH

EMDB-29541:
Structure of neck with portal vertex of capsid of Agrobacterium phage Milano
Method: single particle / : Sonani RR, Wang F, Esteves NC, Kelly RJ, Sebastian A, Kreutzberger MAB, Leiman PG, Scharf BE, Egelman EH

EMDB-25443:
CryoEM map of the manually-picked stalled contraction intermediate state of bacteriophage A511.
Method: single particle / : Fraser A, Leiman PG

EMDB-25444:
CryoEM map of the CNN-picked stalled contraction intermediate state of bacteriophage A511.
Method: single particle / : Fraser A, Leiman PG

EMDB-24763:
Cryo-EM map of the phage AR9 non-virion RNA polymerase holoenzyme in complex with DNA containing the AR9 P077 promoter
Method: single particle / : Fraser A, Leiman PG, Sokolova ML

EMDB-24765:
Cryo-EM map of the phage AR9 non-virion RNA polymerase holoenzyme
Method: single particle / : Fraser A, Leiman PG, Sokolova ML

EMDB-20526:
CryoEM Structure of Pyocin R2 - precontracted - trunk
Method: helical / : Ge P, Avaylon J

EMDB-20643:
CryoEM Structure of Pyocin R2 - precontracted - baseplate
Method: single particle / : Ge P, Avaylon J

EMDB-20644:
CryoEM Structure of Pyocin R2 - precontracted - collar
Method: single particle / : Ge P, Avaylon J

EMDB-20646:
CryoEM Structure of Pyocin R2 - precontracted - hub
Method: single particle / : Ge P, Avaylon J

EMDB-20647:
CryoEM Structure of Pyocin R2 - postcontracted - collar
Method: single particle / : Ge P, Avaylon J

EMDB-20648:
CryoEM Structure of Pyocin R2 - postcontracted - baseplate
Method: single particle / : Ge P, Avaylon J

EMDB-7559:
Bacteriophage A511 baseplate in post-host attachment state (urea-induced)
Method: single particle / : Guerrero-Ferreira R

EMDB-7560:
Bacteriophage A511 baseplate in pre-host attachment state
Method: single particle / : Guerrero-Ferreira R

EMDB-7561:
Bacteriophage A511 baseplate in post-host attachment state
Method: single particle / : Guerrero-Ferreira R

EMDB-8767:
Cryo-EM structure of the T4 tail tube
Method: helical / : Zheng W, Wang F

EMDB-8396:
Asymmetric reconstruction of bacteriophage MS2 mutant NEO1
Method: single particle / : Guerrero-Ferreira RC, Nazarov SY, Zhong Q, Kohn T, Leiman PG

EMDB-8360:
Asymmetric reconstruction of bacteriophage MS2
Method: single particle / : Nazarov SU, Guerrero-Ferreira RC, Zhong Q, Kohn T, Leiman PG

EMDB-3374:
Cryo-electron microscopy structure of the hexagonal pre-attachment T4 baseplate-tail tube complex
Method: single particle / : Taylor NMI, Guerrero-Ferreira RC, Goldie KN, Stahlberg H, Leiman PG

EMDB-3392:
Cryo-electron microscopy structure of the hexagonal pre-attachment T4 baseplate-tail tube complex: locally masked refinement of the inner baseplate
Method: single particle / : Taylor NMI, Guerrero-Ferreira RC, Goldie KN, Stahlberg H, Leiman PG

EMDB-3393:
Cryo-electron microscopy structure of the hexagonal pre-attachment T4 baseplate-tail tube complex: locally masked refinement of the intermediate baseplate
Method: single particle / : Taylor NMI, Guerrero-Ferreira RC, Goldie KN, Stahlberg H, Leiman PG

EMDB-3394:
Cryo-electron microscopy structure of the hexagonal pre-attachment T4 baseplate-tail tube complex: locally masked refinement of the upper peripheral baseplate
Method: single particle / : Taylor NMI, Guerrero-Ferreira RC, Goldie KN, Stahlberg H, Leiman PG

EMDB-3395:
Cryo-electron microscopy structure of the hexagonal pre-attachment T4 baseplate-tail tube complex: locally masked refinement of the lower peripheral baseplate
Method: single particle / : Taylor NMI, Guerrero-Ferreira RC, Goldie KN, Stahlberg H, Leiman PG

EMDB-3396:
Cryo-electron microscopy structure of the star-shaped, hubless post-attachment T4 baseplate
Method: single particle / : Taylor NMI, Guerrero-Ferreira RC, Goldie KN, Stahlberg H, Leiman PG

EMDB-3397:
Cryo-electron microscopy structure of the hexagonal pre-attachment T4 baseplate-tail tube complex: locally masked refinement of the tail tube
Method: single particle / : Taylor NMI, Guerrero-Ferreira RC, Goldie KN, Stahlberg H, Leiman PG

EMDB-6270:
Atomic structures of a bactericidal contractile nanotube in its pre- and post-contraction states
Method: helical / : Ge P, Scholl D, Leiman PG, Yu X, Miller JF, Zhou ZH

EMDB-6271:
Atomic structures of a bactericidal contractile nanotube in its pre- and post-contraction states
Method: helical / : Ge P, Scholl D, Leiman PG, Yu X, Miller JF, Zhou ZH

EMDB-5409:
A 3-D cryo-electron structure of bacteriophage phi92 contractile tail
Method: single particle / : Nazarov S, Bowman VD, Leiman PG

EMDB-2063:
A 3-D cryo-electron microscopy structure of bacteriophage phi92 capsid
Method: single particle / : Browning C, Nazarov S, Bowman V, Leiman P

EMDB-2064:
A 3-D cryo-electron structure of bacteriophage phi92 baseplate
Method: single particle / : Browning C, Nazarov S, Bowman VD, Leiman PG

EMDB-1414:
Molecular architecture of the prolate head of bacteriophage T4.
Method: single particle / : Fokine A, Chipman P, Leiman P, Mesyanzhinov V, Rao V, Rossmann M

EMDB-1333:
The structures of bacteriophages K1E and K1-5 explain processive degradation of polysaccharide capsules and evolution of new host specificities.
Method: single particle / : Leiman PG, Battisti AJ, Bowman VD, Stummeyer K, Muhlenhoff M, Gerardy-Schahn R, Scholl D, Molineux IJ

EMDB-1334:
The structures of bacteriophages K1E and K1-5 explain processive degradation of polysaccharide capsules and evolution of new host specificities.
Method: single particle / : Leiman PG, Battisti AJ, Bowman VD, Stummeyer K, Muhlenhoff M, Gerardy-Schahn R, Scholl D, Molineux IJ

EMDB-1335:
The structures of bacteriophages K1E and K1-5 explain processive degradation of polysaccharide capsules and evolution of new host specificities.
Method: single particle / : Leiman PG, Battisti AJ, Bowman VD, Stummeyer K, Muhlenhoff M, Gerardy-Schahn R, Scholl D, Molineux IJ

EMDB-1336:
The structures of bacteriophages K1E and K1-5 explain processive degradation of polysaccharide capsules and evolution of new host specificities.
Method: single particle / : Leiman PG, Battisti AJ, Bowman VD, Stummeyer K, Muhlenhoff M, Gerardy-Schahn R, Scholl D, Molineux IJ

EMDB-1337:
The structures of bacteriophages K1E and K1-5 explain processive degradation of polysaccharide capsules and evolution of new host specificities.
Method: single particle / : Leiman PG, Battisti AJ, Bowman VD, Stummeyer K, Muhlenhoff M, Gerardy-Schahn R, Scholl D, Molineux IJ

EMDB-1126:
The tail structure of bacteriophage T4 and its mechanism of contraction.
Method: single particle / : Kostyuchenko VA, Chipman PR, Leiman PG, Arisaka F, Mesyanzhinov VV, Rossmann MG

EMDB-1086:
Three-dimensional rearrangement of proteins in the tail of bacteriophage T4 on infection of its host.
Method: single particle / : Leiman PG, Chipman PR, Kostyuchenko VA, Mesyanzhinov VV, Rossmann MG

EMDB-1089:
Three-dimensional rearrangement of proteins in the tail of bacteriophage T4 on infection of its host.
Method: single particle / : Leiman PG, Chipman PR, Kostyuchenko VA, Mesyanzhinov VV, Rossmann MG

EMDB-1075:
Molecular architecture of the prolate head of bacteriophage T4.
Method: single particle / : Fokine A, Chipman PR, Leiman PG, Mesyanzhinov VV, Rao VB, Rossmann MG

EMDB-1048:
Three-dimensional structure of bacteriophage T4 baseplate.
Method: single particle / : Kostyuchenko VA, Leiman PG, Chipman PR, Kanamaru S, vanRaaij MJ, Arisaka F, Mesyanzhinov VV, Rossmann MG

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more