[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 337 items for (author: j. & frank)

PDB-8uao:
DpHF18 filament
Method: helical / : Lynch EM, Shen H, Kollman JM, Baker D

PDB-8ub3:
DpHF7 filament
Method: helical / : Lynch EM, Farrell D, Shen H, Kollman JM, DiMaio F, Baker D

PDB-8ubg:
DpHF19 filament
Method: helical / : Lynch EM, Shen H, Kollman JM, Baker D

PDB-8rf0:
WT-CGS sample in nanodisc
Method: single particle / : Sedzicki J, Ni D, Lehmann F, Stahlberg H, Dehio C

PDB-8rf9:
CgsiGP1 sample in nanodisc
Method: single particle / : Sedzicki J, Ni D, Lehmann F, Stahlberg H, Dehio C

PDB-8rfe:
CgsiGP2 sample in nanodisc
Method: single particle / : Sedzicki J, Ni D, Lehmann F, Stahlberg H, Dehio C

PDB-8rfg:
CgsiGP3 sample in nanodisc
Method: single particle / : Sedzicki J, Ni D, Lehmann F, Stahlberg H, Dehio C

PDB-8qyj:
Human 20S proteasome assembly structure 1
Method: single particle / : Schulman BA, Hanna JW, Harper JW, Adolf F, Du J, Rawson SD, Walsh Jr RM, Goodall EA

PDB-8qyl:
Human 20S proteasome assembly intermediate structure 2
Method: single particle / : Schulman BA, Hanna JW, Harper JW, Adolf F, Du J, Rawson SD, Walsh Jr RM, Goodall EA

PDB-8qym:
Human 20S proteasome assembly intermediate structure 3
Method: single particle / : Schulman BA, Hanna JW, Harper JW, Adolf F, Du J, Rawson SD, Walsh Jr RM, Goodall EA

PDB-8qyn:
Human 20S proteasome assembly intermediate structure 5
Method: single particle / : Schulman BA, Hanna JW, Harper JW, Adolf F, Du J, Rawson SD, Walsh Jr RM, Goodall EA

PDB-8qyo:
Human proteasome 20S core particle
Method: single particle / : Schulman BA, Hanna JW, Harper JW, Adolf F, Du J, Rawson SD, Walsh Jr RM, Goodall EA

PDB-8qys:
Human preholo proteasome 20S core particle
Method: single particle / : Schulman BA, Hanna JW, Harper JW, Adolf F, Du J, Rawson SD, Walsh Jr RM, Goodall EA

PDB-8qz9:
Human 20S proteasome assembly intermediate structure 4
Method: single particle / : Schulman BA, Hanna JW, Harper JW, Adolf F, Du J, Rawson SD, Walsh Jr RM, Goodall EA

PDB-8g2u:
Time-resolved cryo-EM study of the 70S recycling by the HflX:control-apo-70S at 900ms
Method: single particle / : Bhattacharjee S, Brown PZ, Frank J

PDB-8g31:
Time-resolved cryo-EM study of the 70S recycling by the HflX:2nd Intermediate
Method: single particle / : Bhattacharjee S, Brown PZ, Frank J

PDB-8g34:
Time-resolved cryo-EM study of the 70S recycling by the HflX:1st intermediate
Method: single particle / : Bhattacharjee S, Brown PZ, Frank J

PDB-8g38:
Time-resolved cryo-EM study of the 70S recycling by the HflX:3rd Intermediate
Method: single particle / : Bhattacharjee S, Brown PZ, Frank J

PDB-8sr5:
particulate methane monooxygenase potassium cyanide treated
Method: single particle / : Tucci FJ, Rosenzweig AC

PDB-8sqw:
particulate methane monooxygenase crosslinked with 2,2,2-trifluoroethanol bound
Method: single particle / : Tucci FJ, Rosenzweig AC

PDB-8sr1:
particulate methane monooxygenase crosslinked with 4,4,4-trifluorobutanol bound
Method: single particle / : Tucci FJ, Rosenzweig AC

PDB-8sr4:
particulate methane monooxygeanse treated with potassium cyanide and copper reloaded
Method: single particle / : Tucci FJ, Jodts RJ, Rosenzweig AC

PDB-8oyi:
particulate methane monooxygenase with 2,2,2-trifluoroethanol bound
Method: single particle / : Tucci FJ, Rosenzweig AC

PDB-8fxb:
SARS-CoV-2 XBB.1 spike RBD bound to the human ACE2 ectodomain and the S309 neutralizing antibody Fab fragment
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

PDB-8fxc:
SARS-CoV-2 BQ.1.1 spike RBD bound to the human ACE2 ectodomain and the S309 neutralizing antibody Fab fragment
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

PDB-8s9g:
SARS-CoV-2 BN.1 spike RBD bound to the human ACE2 ectodomain and the S309 neutralizing antibody Fab fragment
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

PDB-8tcf:
Integrin alpha-v beta-8 in complex with minibinder B8_BP_dsulf
Method: single particle / : Campbell MG, Fernandez A, Roy A, Kraft J, Baker D

PDB-8tcg:
Integrin alpha-v beta-6 in complex with minibinder B6_BP_dslf
Method: single particle / : Campbell MG, Fernandez A, Roy A, Kraft J, Baker D

PDB-8edm:
Cryo-EM structure of the full-length human NF1 dimer
Method: single particle / : Darling JE, Merk A, Grisshammer R, Ognjenovic J

PDB-8bi4:
Helical shell of CCMV capsid protein on DNA origami 6HB-2k
Method: single particle / : Kumpula EP, Seitz I, Kostiainen MA, Huiskonen JT

PDB-8f3c:
Cryo-EM consensus structure of Escherichia coli que-PEC (paused elongation complex) RNA Polymerase minus preQ1 ligand
Method: single particle / : Porta JC, Chauvier A, Deb I, Ellinger E, Frank AT, Meze K, Ohi MD, Walter NG

PDB-8g00:
Cryo-EM structure of 3DVA component 0 of Escherichia coli que-PEC (paused elongation complex) RNA Polymerase minus preQ1 ligand
Method: single particle / : Porta JC, Chauvier A, Deb I, Ellinger E, Frank AT, Meze K, Ohi MD, Walter NG

PDB-8g1s:
Cryo-EM structure of 3DVA component 1 of Escherichia coli que-PEC (paused elongation complex) RNA Polymerase minus preQ1 ligand
Method: single particle / : Porta JC, Chauvier A, Deb I, Ellinger E, Frank AT, Meze K, Ohi MD, Walter NG

PDB-8g2w:
Cryo-EM structure of 3DVA component 2 of Escherichia coli que-PEC (paused elongation complex) RNA Polymerase minus preQ1 ligand
Method: single particle / : Porta JC, Chauvier A, Deb I, Ellinger E, Frank AT, Meze K, Ohi MD, Walter NG

PDB-8g4w:
Cryo-EM consensus structure of Escherichia coli que-PEC (paused elongation complex) RNA Polymerase plus preQ1 ligand
Method: single particle / : Porta JC, Chauvier A, Deb I, Ellinger E, Frank AT, Meze K, Ohi MD, Walter NG

PDB-8g7e:
Cryo-EM structure of 3DVA component 0 of Escherichia coli que-PEC (paused elongation complex) RNA Polymerase plus preQ1 ligand
Method: single particle / : Porta JC, Chauvier A, Deb I, Ellinger E, Frank AT, Meze K, Ohi MD, Walter NG

PDB-8g8z:
Cryo-EM structure of 3DVA component 1 of Escherichia coli que-PEC (paused elongation complex) RNA Polymerase plus preQ1 ligand
Method: single particle / : Porta JC, Ohi MD, Walter NG, Frank AT, Deb I, Meze K

PDB-8sk7:
Cryo-EM structure of designed Influenza HA binder, HA_20, bound to Influenza HA (Strain: Iowa43)
Method: single particle / : Borst AJ, Bennett NR

PDB-8e20:
Cryo-EM structure of the full-length human NF1 dimer
Method: single particle / : Darling JE, Merk A, Grisshammer R, Ognjenovic J

PDB-7ztc:
Non-muscle F-actin decorated with non-muscle tropomyosin 1.6
Method: helical / : Selvaraj M, Kokate S, Kogan K, Kotila T, Kremneva E, Lappalainen P, Huiskonen JT

PDB-7ztd:
Non-muscle F-actin decorated with non-muscle tropomyosin 3.2
Method: helical / : Selvaraj M, Kokate S, Kogan K, Kotila T, Kremneva E, Lappalainen P, Huiskonen JT

PDB-8dmf:
Cryo-EM structure of the ribosome-bound Bacteroides thetaiotaomicron EF-G2
Method: single particle / : Wang C, Han W, Groisman EA, Liu J

PDB-7znu:
cryo-EM structure of CGT ABC transporter in detergent micelle
Method: single particle / : Jaroslaw S, Dong CN, Frank L, Na W, Renato Z, Seunho J, Henning S, Christoph D

PDB-7zo8:
cryo-EM structure of CGT ABC transporter in nanodisc apo state
Method: single particle / : Jaroslaw S, Dong CN, Frank L, Na W, Renato Z, Seunho J, Henning S, Christoph D

PDB-7zo9:
cryo-EM structure of CGT ABC transporter in vanadate trapped state
Method: single particle / : Jaroslaw S, Dong CN, Frank L, Na W, Renato Z, Seunho J, Henning S, Christoph D

PDB-7zoa:
cryo-EM structure of CGT ABC transporter in presence of CBG substrate
Method: single particle / : Jaroslaw S, Dong CN, Frank L, Na W, Renato Z, Seunho J, Henning S, Christoph D

PDB-8dya:
Structure of the SARS-CoV-2 spike glycoprotein S2 subunit
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

PDB-7qup:
D. melanogaster 13-protofilament microtubule
Method: single particle / : Wagstaff J, Planelles-Herrero VJ, Derivery E, Lowe J

PDB-8erq:
SARS-CoV-2 BA.1 spike ectodomain trimer in complex with the S2X324 neutralizing antibody Fab fragment (local refinement of the RBD and S2X324)
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

PDB-8err:
SARS-CoV-2 Omicron BA.1 spike ectodomain trimer in complex with the S2X324 neutralizing antibody Fab fragment
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more