[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 1,956 items for (author: ho & kh)

EMDB-17197:
Human TPC2 in Complex with Antagonist (S)-SG-094
Method: single particle / : Chi G, Pike ACW, Maclean EM, Li H, Mukhopadhyay SMM, Bohstedt T, Wang D, McKinley G, Fernandez-Cid A, Duerr K

EMDB-19108:
Human TPC2 in Complex withAntagonist (R)-SG-094
Method: single particle / : Chi G, Pike ACW, Maclean EM, Li H, Mukhopadhyay SMM, Bohstedt T, Wang D, McKinley G, Fernandez-Cid A, Duerr K

PDB-8ouo:
Human TPC2 in Complex with Antagonist (S)-SG-094
Method: single particle / : Chi G, Pike ACW, Maclean EM, Li H, Mukhopadhyay SMM, Bohstedt T, Wang D, McKinley G, Fernandez-Cid A, Duerr K

EMDB-42074:
Representative tomogram of Enterococcus faecium WT Com15
Method: electron tomography / : Hang HC, Park D

EMDB-42086:
Representative tomogram of Enterococcus faecium SagA complementation strain
Method: electron tomography / : Hang HC, Park D

EMDB-42087:
Representative tomogram of Enterococcus faecium SagA deletion strain
Method: electron tomography / : Hang HC, Park D

EMDB-19066:
TREK2 in OGNG/CHS detergent micelle with biparatopic inhibitory nanobody Nb6158
Method: single particle / : Smith KHM, Tucker SJ

EMDB-42676:
5-HT2AR bound to Lisuride in complex with a mini-Gq protein and an active-state stabilizing single-chain variable fragment (scFv16) obtained by cryo-electron microscopy (cryoEM)
Method: single particle / : Barros-Alvarez X, Kim K, Panova O, Roth BL, Skiniotis G

EMDB-42999:
5HT2AR-miniGq heterotrimer in complex with a novel agonist obtained from large scale docking
Method: single particle / : Gumpper RH, Wang L, Kapolka N, Skiniotis G, Roth BL

PDB-8uwl:
5-HT2AR bound to Lisuride in complex with a mini-Gq protein and an active-state stabilizing single-chain variable fragment (scFv16) obtained by cryo-electron microscopy (cryoEM)
Method: single particle / : Barros-Alvarez X, Kim K, Panova O, Roth BL, Skiniotis G

PDB-8v6u:
5HT2AR-miniGq heterotrimer in complex with a novel agonist obtained from large scale docking
Method: single particle / : Gumpper RH, Wang L, Kapolka N, Skiniotis G, Roth BL

EMDB-17680:
Cryo EM structure of the type 3B polymorph of alpha-synuclein at low pH.
Method: helical / : Frey L, Qureshi BM, Kwiatkowski W, Rhyner D, Greenwald J, Riek R

EMDB-17693:
Cryo EM structure of the type 3C polymorph of alpha-synuclein at low pH.
Method: helical / : Frey L, Qureshi BM, Kwiatkowski W, Rhyner D, Greenwald J, Riek R

EMDB-17714:
Cryo EM structure of the type 3D polymorph of alpha-synuclein E46K mutant at low pH.
Method: helical / : Frey L, Qureshi BM, Kwiatkowski W, Rhyner D, Greenwald J, Riek R

EMDB-17723:
Cryo EM structure of the type 1m polymorph of alpha-synuclein
Method: helical / : Frey L, Qureshi BM, Kwiatkowski W, Rhyner D, Greenwald J, Riek R

EMDB-17726:
Cryo EM structure of the type 5A polymorph of alpha-synuclein.
Method: helical / : Frey L, Qureshi BM, Kwiatkowski W, Rhyner D, Greenwald J, Riek R

EMDB-50076:
Cryo EM map of the type 2A polymorph of alpha-synuclein at pH 7.0.
Method: helical / : Frey L, Qureshi BM, Kwiatkowski W, Rhyner D, Greenwald J, Riek R

EMDB-50077:
Cryo EM map of the type 2B polymorph of alpha-synuclein at pH 7.0.
Method: helical / : Frey L, Qureshi BM, Kwiatkowski W, Rhyner D, Greenwald J, Riek R

EMDB-40825:
10E8-GT10.2 immunogen in complex with human Fab 10E8 and mouse Fab W6-10
Method: single particle / : Huang J, Ozorowski G, Ward AB

EMDB-18639:
Locally refined SARS-CoV-2 BA-2.86 Spike receptor binding domain (RBD) complexed with angiotensin converting enzyme 2 (ACE2)
Method: single particle / : Ren J, Stuart DI, Duyvesteyn HME

EMDB-18649:
Local refinement of SARS-CoV-2 BA.2.86 Spike and XBB-7 Fab
Method: single particle / : Ren J, Duyvesteyn HME, Stuart DI

EMDB-19002:
XBB-4 Fab in complex with SARS-CoV-2 BA.2.12.1 Spike Glycoprotein
Method: single particle / : Duyvesteyn HME, Ren J, Stuart DI

PDB-8qsq:
Locally refined SARS-CoV-2 BA-2.86 Spike receptor binding domain (RBD) complexed with angiotensin converting enzyme 2 (ACE2)
Method: single particle / : Ren J, Stuart DI, Duyvesteyn HME

PDB-8qtd:
Local refinement of SARS-CoV-2 BA.2.86 Spike and XBB-7 Fab
Method: single particle / : Ren J, Duyvesteyn HME, Stuart DI

PDB-8r8k:
XBB-4 Fab in complex with SARS-CoV-2 BA.2.12.1 Spike Glycoprotein
Method: single particle / : Duyvesteyn HME, Ren J, Stuart DI

EMDB-40674:
Subtomogram average of immature PhiKZ Major Capsid Protein from tubular arrays
Method: subtomogram averaging / : Laughlin TG, Villa E

EMDB-34548:
Spike 3-up RBD with THSC20.HVTR04 (Fab4): State - III
Method: single particle / : Rencilin CF, Ansari MY, Chatterjee A, Deshpande S, Mukherjee S, Singh R, Jayatheertha S, Reddy PM, Das P, Hingankar N, Rathore D, Varadarajan R, Bhattacharya J, Dutta S

EMDB-34563:
Spike 2-up RBD with THSC20.HVTR26 (Fab26): State - I
Method: single particle / : Rencilin CF, Ansari MY, Chatterjee A, Deshpande S, Mukherjee S, Singh R, Jayatheertha S, Reddy PM, Das P, Hingankar N, Rathore D, Varadarajan R, Bhattacharya J, Dutta S

EMDB-34602:
State - I: Spike 2-up RBD with THSC20.HVTR26 (Fab26)
Method: single particle / : Rencilin CF, Ansari MY, Chatterjee A, Deshpande S, Mukherjee S, Singh R, Jayatheertha S, Reddy PM, Das P, Hingankar N, Rathore D, Varadarajan R, Bhattacharya J, Dutta S

EMDB-34603:
State - II: Spike 3-up RBD with THSC20.HVTR26 (Fab26)
Method: single particle / : Rencilin CF, Ansari MY, Chatterjee A, Deshpande S, Mukherjee S, Singh R, Jayatheertha S, Reddy PM, Das P, Hingankar N, Rathore D, Varadarajan R, Bhattacharya J, Dutta S

EMDB-43683:
Cryo-EM structure of FLVCR2 in the inward-facing state with choline bound
Method: single particle / : Cater RJ, Mancia F

EMDB-43684:
Cryo-EM structure of FLVCR2 in the outward-facing state with choline bound
Method: single particle / : Cater RJ, Mancia F

PDB-8vzn:
Cryo-EM structure of FLVCR2 in the inward-facing state with choline bound
Method: single particle / : Cater RJ, Mancia F

PDB-8vzo:
Cryo-EM structure of FLVCR2 in the outward-facing state with choline bound
Method: single particle / : Cater RJ, Mancia F

EMDB-34546:
State - I: Spike 2-up RBD with THSC20.HVTR04 (Fab4)
Method: single particle / : Rencilin CF, Ansari MY, Chatterjee A, Deshpande S, Mukherjee S, Singh R, Jayatheertha S, Reddy PM, Das P, Hingankar N, Rathore D, Varadarajan R, Bhattacharya J, Dutta S

EMDB-34547:
Spike 3-up RBD with THSC20.HVTR04 (Fab4): State - II
Method: single particle / : Rencilin CF, Ansari MY, Chatterjee A, Deshpande S, Mukherjee S, Singh R, Jayatheertha S, Reddy PM, Das P, Hingankar N, Rathore D, Varadarajan R, Bhattacharya J, Dutta S

EMDB-40180:
MsbA bound to cerastecin C
Method: single particle / : Chen Y, Klein D

PDB-8gk7:
MsbA bound to cerastecin C
Method: single particle / : Chen Y, Klein D

EMDB-19767:
Structure of a 2873 Scaffold Base DNA Origami V1
Method: single particle / : Ali K, Georg K, Volodymyr M, Johanna G, Maximilian NH, Lukas K, Simone C, Hendrik D

EMDB-19769:
Structure of a 2873 Scaffold Base DNA Origami V2
Method: single particle / : Ali K, Georg K, Volodymyr M, Johanna G, Maximilian NH, Lukas K, Simone C, Hendrik D

EMDB-19770:
Structure of a 2873 Scaffold Base DNA Origami V3
Method: single particle / : Ali K, Georg K, Volodymyr M, Johanna G, Maximilian NH, Lukas K, Simone C, Hendrik D

EMDB-19775:
Structure of a 1033 Scaffold Base DNA Origami Nanostructure V4 with Desalted Purified Staples
Method: single particle / : Ali K, Georg K, Volodymyr M, Johanna G, Maximilian NH, Lukas K, Simone C, Hendrik D

EMDB-19776:
Structure of a 1033 Scaffold Base DNA Origami Nanostructure V4 with HPLC Purified Staples
Method: single particle / : Ali K, Georg K, Volodymyr M, Johanna G, Maximilian NH, Lukas K, Simone C, Hendrik D

EMDB-19867:
Cryo-EM Structure of a 1033 Scaffold Base DNA Origami Nanostructure V4 and TBA
Method: single particle / : Ali K, Georg K, Volodymyr M, Johanna G, Maximilian NH, Lukas K, Simone C, Hendrik D

EMDB-19874:
Refinement Focused on the 1st Body of a 1033 Scaffold-Based DNA Origami Nanostructure V4 with TBA
Method: single particle / : Ali K, Georg K, Volodymyr M, Johanna G, Maximilian NH, Lukas K, Simone C, Hendrik D

EMDB-19875:
Refinement Focused on the 2nd Body of a 1033 Scaffold-Based DNA Origami Nanostructure V4 with TBA
Method: single particle / : Ali K, Georg K, Volodymyr M, Johanna G, Maximilian NH, Lukas K, Simone C, Hendrik D

EMDB-19876:
Refinement Focused on the 3rd Body of a 1033 Scaffold-Based DNA Origami Nanostructure V4 with TBA
Method: single particle / : Ali K, Georg K, Volodymyr M, Johanna G, Maximilian NH, Lukas K, Simone C, Hendrik D

PDB-9eoq:
Cryo-EM Structure of a 1033 Scaffold Base DNA Origami Nanostructure V4 and TBA
Method: single particle / : Ali K, Georg K, Volodymyr M, Johanna G, Maximilian NH, Lukas K, Simone C, Hendrik D

EMDB-42994:
Apo-state cryo-EM structure of human TRPV3 in cNW30 nanodiscs
Method: single particle / : Nadezhdin KD, Neuberger A, Sobolevsky AI

EMDB-42995:
Open-state cryo-EM structure of human TRPV3 in presence of tetrahydrocannabivarin (THCV) in cNW30 nanodiscs
Method: single particle / : Nadezhdin KD, Neuberger A, Sobolevsky AI

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more