An example of the result of "3D Library Search" is shown at the end of this page. Basically, the result is composed of following six parts:
#### MATRAS VER 1.1: PROGRAM FOR PROTEIN 3D STRUCTURE COMPARISON #### # coded by Takeshi Kawabata. Last Modified : Apr 4, 2003 ## Takeshi Kawabata and Ken Nishikawa. # "Protein Structure Comparison Using the Markov Transition Model of Evolution". # Proteins vol.41:108-122(2000). # "/var/www/html/matras/cgi-bin/Matras L -Q 4azuA.bssp -L /usr/DB/RepPDB/03Apr2/40pdb03Apr2.list " # "Apr 4,2003 18:16:9" # L:ONE-VS-LIBRARY COMPARISON # # QueFile "L" LibFile "4azuA.bssp" # SseAliType T EnvAliType T AlgType L # ssescfile "3U" envscfile "env-3U.rom" DisSc N disscfile "3U" DisScE - EnvType T Nenvstate 10 # GapExtE -6.0 GapExtD -100.0 Nkeep 35 Nrep 10 SseOffsetD 0 [QUERY_PROTEIN] 4azuA.bssp [QUERY_COMPND] AZURIN (PH 5.5) [QUERY_SIZE] Naa 128 Nsse 10 [MAX_NAAB] 1507 [LIBRARY_FILE] /usr/DB/RepPDB/03Apr2/40pdb03Apr2.list [LIBRARY_SIZE] 4401 [WAY_OF_RANKING] DisSc Ncmp^2-fitting Zsc ( 2.591349 *x*x + -196.758 SD 2097.125 ) [Z_THRESHOLD] 6.000000 [NRANK] 25 [BEST_SCORE_RANKING] rk entry start end Rdis Zsc SqID MOLECULAR NAME 1 1jzgA 1 128 93.7 57.54 100.0 "AZURIN" 2 1qhqA 15 139 61.1 37.73 29.2 "AURACYANIN" 3 1e30A 37 155 35.2 22.08 15.4 "RUSTICYANIN" 4 1fwxA 486 579 3.7 18.85 18.5 "NITROUS OXIDE REDUCTASE" 5 1kv7A 43 163 4.8 15.73 14.3 "PROBABLE BLUE-COPPER PROTEIN YACK" 6 1cyx- 126 225 23.7 15.02 10.2 "CYOA" 7 2cuaA 78 167 29.9 14.06 17.0 "CUA" 8 1fftB 126 225 13.3 13.87 8.0 "UBIQUINOL OXIDASE" 9 1ehkB 78 167 22.4 13.20 17.0 "BA3-TYPE CYTOCHROME-C OXIDASE" 10 1bxaA 17 105 30.1 11.16 20.2 "AMICYANIN" 11 1ibyA 31 111 25.2 10.55 13.6 "NITROSOCYANIN" 12 1ikoP 31 168 27.8 10.20 8.1 "EPHRIN-B2" 13 1kcw- 239 336 0.9 9.94 11.0 "CERULOPLASMIN" 14 1bqk- 1 93 23.1 9.24 23.0 "PSEUDOAZURIN" 15 1l4iA 1 116 15.0 8.68 6.3 "SFAE PROTEIN" 16 1n0lA 1 116 12.9 8.55 11.3 "CHAPERONE PROTEIN PAPD" 17 1plc- 1 99 28.0 8.16 15.2 "PLASTOCYANIN (CU2+, PH 6.0)" 18 2cbp- 1 96 27.8 7.77 14.3 "CUCUMBER BASIC PROTEIN" 19 1m56B 191 270 8.3 7.66 14.1 "CYTOCHROME C OXIDASE" 20 1hxmA 2 118 14.9 7.21 9.5 "GAMMA-DELTA T-CELL RECEPTOR" 21 1jer- 2 106 25.7 7.02 11.5 "CUCUMBER STELLACYANIN" 22 1nif- 215 323 6.0 6.71 17.2 "NITRITE REDUCTASE" 23 1aozA 203 299 2.3 6.37 12.8 "ASCORBATE OXIDASE (E.C.1.10.3.3)" 24 1gff2 53 149 13.1 6.32 10.1 "BACTERIOPHAGE G4 CAPSID PROTEINS GPF, GPG, GPJ" 25 1ten- 803 891 24.4 6.04 12.8 "TENASCIN (THIRD FIBRONECTIN TYPE III REPEAT)" [BEST_SCORE_RANKING_WITH_DETAILED_INFORMATION] rk entry Naa Ncmp SqID rms Ssse Rsse Sdis Rdis Zsc RelS RelO TAXONOMY 1 1jzgA 128 128 100.0 0.8 2585 94.5 162932 93.7 57.54 100.0 100.0 [b.6.1] 2 1qhqA 139 120 29.2 2.1 1414 59.4 116237 61.1 37.73 98.9 99.7 [b.6.1] 3 1e30A 153 104 15.4 2.7 1114 26.5 74144 35.2 22.08 83.6 98.1 [b.6.1] 4 1fwxA 591 92 18.5 2.0 994 2.6 61265 3.7 18.85 5.6 12.0 [b.69.3] 5 1kv7A 463 98 14.3 3.4 811 4.1 57674 4.8 15.73 7.3 15.5 [b.6.1] 6 1cyx- 158 88 10.2 2.3 911 22.3 51366 23.7 15.02 56.3 87.6 [b.6.1] 7 2cuaA 122 88 17.0 2.3 873 32.3 49362 29.9 14.06 70.9 96.0 [b.6.1] 8 1fftB 257 88 8.0 2.4 526 8.8 48948 13.3 13.87 27.6 51.5 [f.2.1] 9 1ehkB 166 88 17.0 2.4 875 28.5 47549 22.4 13.20 53.2 84.7 [f.2.1] 10 1bxaA 105 89 20.2 3.7 1081 35.0 43728 30.1 11.16 71.4 96.2 [b.6.1] 11 1ibyA 112 81 13.6 2.6 791 31.4 38921 25.2 10.55 59.9 90.8 [b.6.1] 12 1ikoP 141 111 8.1 4.2 935 33.8 53117 27.8 10.20 66.1 93.8 [b.6.1] 13 1kcw- 1017 91 11.0 4.8 812 0.8 42116 0.9 9.94 1.7 3.6 [b.6.1] 14 1bqk- 124 87 23.0 3.6 820 30.3 38793 23.1 9.24 54.8 86.2 [b.6.1] 15 1l4iA 189 95 6.3 3.7 568 9.5 41394 15.0 8.68 32.7 59.8 [b.1.11] 16 1n0lA 215 97 11.3 3.9 553 7.0 42108 12.9 8.55 26.6 49.9 [b.1.11] 17 1plc- 99 92 15.2 4.2 796 32.1 38848 28.0 8.16 66.4 93.9 [b.6.1] 18 2cbp- 96 91 14.3 3.9 734 33.2 37563 27.8 7.77 66.1 93.8 [b.6.1] 19 1m56B 260 78 14.1 3.9 870 20.7 31635 8.3 7.66 14.6 29.4 [f.2.1] 20 1hxmA 206 105 9.5 4.2 524 7.0 43497 14.9 7.21 32.3 59.1 [b.1.1] 21 1jer- 110 96 11.5 4.1 845 34.8 38397 25.7 7.02 61.0 91.3 [b.6.1] 22 1nif- 333 99 17.2 7.0 900 8.7 39270 6.0 6.71 9.8 20.3 [b.6.1] 23 1aozA 552 94 12.8 7.1 841 3.4 36051 2.3 6.37 3.6 7.7 [b.6.1] 24 1gff2 177 89 10.1 5.5 472 9.8 33593 13.1 6.32 27.2 50.8 [b.10.1] 25 1ten- 89 86 12.8 4.1 433 19.9 31630 24.4 6.04 57.9 89.1 [b.1.2] [BEST_RANKING_WITH_ONE_LINE_SECONDARY_STRUCTURE] rk entry staQ |staL | . . . . : . . . . + . . | endL| endQ (query ) 1| ---|ccEEEccccEEccEEEEccHHHcEEcHHHHHHccccccEEcccEEEEccccEEccccEEE|--- |128 1 1jzgA 1| 1|ccEEEccccEEccEEEEccHHHcEEcHHHHHcccccccEEcccEEEEccccEEccccEEE|128 |128 2 1qhqA 1| 15|cEEEEccccEEEcEEEEccc-ccEEHHHHHHcccccccEEcccEEEE-ccEEEccccEEE|139 |128 3 1e30A 2| 37|-EEEEccEEEEccEEEEcc--ccEEcccc-c---ccccEEcccEEEc-ccEEEccccEEE|155 |128 4 1fwxA 2| 486|-EEEEEcEcEEEcEEEEcccccEEc-------------EEEEcEEEEc-cEEEccccEEE|579 |128 5 1kv7A 1| 43|ccEEEEEEcEEEcEEEEc--cccEEcc----------ccccccEEEEcccEEEcHHHcEE|163 |128 6 1cyx- 2| 126|-EEEEEcEEEEEccEEEc---cEEc-------------EEEEccEEc-ccEEEcccccEE|225 |128 7 2cuaA 2| 78|-EEEEEcEcEEEcEEEEc---cEEc-------------cEEEccEEEcccEEEccccEEE|167 |128 8 1fftB 2| 126|-cEEEcccEccccEEEcc---cEEc-------------EEEEccEEEc-ccEccccccEc|225 |128 9 1ehkB 2| 78|-EEEEEcEcEEEcEEEEc---cEEc-------------cEEcccEEEcccEEEccccEEE|167 |128 10 1bxaA 1| 17|ccEEEEcEcEE-ccEEEc--cccEccc---------ccEEcccEEEcc--EEEc-ccEEE|105 |128 11 1ibyA 11| 31|-----EEEcEEEcEEEEc--ccEEc-------------EEEEcEEEEcc-EEccccccEE|111 |128 12 1ikoP 2| 31|-ccEEcccEEcccEEEccccccEEEHHHc-----ccc-cEEcccEEEcccEEEccHHEEE|168 |128 13 1kcw- 11| 239|-----EEcccEEEEEEEcc-ccEEccc-------cccc-EEEcEEEEcc-EEEcHHHEEE|336 |128 14 1bqk- 3| 1|-cEEEEEEcEEc-cEEEc---ccEccc---------cccccc-cEEcc--EEEc-ccEEE|93 |128 15 1l4iA 12| 1|------EEcEEEcEEEEcccEEEEEccc--------cEEcEEcEEEEcccEEEEcE-EEE|116 |128 16 1n0lA 12| 1|------EEcEEEcEEEEccc-EEEEccEc-------cEEcEEcEEEEcccEEEEEE-EEE|116 |128 17 1plc- 5| 1|--cEEccEcEEccEEEcc---ccEcccc--------cHHcccccEE-EccEEEc-ccEEE|99 |128 18 2cbp- 3| 1|-cEEccccccccccEEEc---ccEEHHHcc------ccEEc--EEEc---EEEccccEEE|96 |128 19 1m56B 13| 191|------cccEEEcEEEEc---cEEc-------------EEEcccEEEc-cEEccccccEE|270 |128 20 1hxmA 11| 2|-----cEEcEEEccEEEccccEEEEccEE----EcEEcEEEEcEEEcccccEEEEEEcEE|118 |128 21 1jer- 2| 2|-cEEccccHHHcEcEEcc---ccEEHHHccc--cc-----cc-cEEcc--EEEccccEEE|106 |128 22 1nif- 10| 215|-----cEEcEEEcEEEEc---ccEEcEEEc---cccEE-ccccEEEE-ccEEEcHHHEEE|323 |128 23 1aozA 17| 203|--------cEEccEEEEcc-cEEEcc--EEEc-cEEEE-EEEcEEEEccccEEEEccEEE|299 |128 24 1gff2 11| 53|-----cEEEEcccEEEEEcccEEEEEccc-------ccEEcEEEEEEcccEEEEE-----|149 |116 25 1ten- 11| 803|-----ccEEEcc-cEEEccc-EEEEcc---------ccEEEE-cEEc-ccEEEEEEcEEE|891 |127 [CLUSTALW_STYLE_LIKE_ALIGNMENT] CLUSTAL W (1.74) multiple sequence alignment QUERY AECSVDIQGNDQMQFNTNAITVDKSCKQFTVNLSHPGNLPKNVMGHNWVLSTAADMQGVV 1jzgA AECSVDIQGNDQMQFNTNAITVDKSCKQFTVNLSHPGNLPKNVMGHNWVLSTAADMQGVV 1qhqA PAQTVEVRAAPALAFAQTSLSLPANT-VVRLDFVNQNNLG---VQHNWVLVNGDVAAAVN 1e30A -TVHVVAAAVPFpSFEVPTLEIPAGA-TVDVTFINTNKG----FGHSFDITKK-GPp--Y 1fwxA -KVRVYMSSV-ApSFSIESFTVKEGD-EVTVIVTNLDEID--DLTHGFTMGN-------- 1kv7A DRNRIQLTIGAGWGYNGPAVKLQRGK-AVTVDIYNQL-----TEETTLHWHGLEV----- 1cyx- -PITIEVVSM-DWKWFFNEIAFPANT-PVYFKVTSNS------VMHSFFIPR-------- 2cuaA -QYTVYVLAF-AfGYQpNpIEVPQGA-EIVFKITSPD------VIHGFHVEG-------- 1fftB -PITIEVVSM-DWKWFFNEIAFPANT-PVYFKVTSNS------VMNSFFIPR-------- 1ehkB -QYTVYVLAF-AfGYQpNpIEVPQGA-EIVFKITSPD------VIHGFHVEG-------- 1bxaA ADGAIVVDIA-KMKYETPELHV---KVGDTVTWINRE-----AMPHNVHFVA-GVL---- 1ibyA ----------FNVLNEpETLVVKKGD-AVKVVVENKS-----PISEGFSIDA-------- 1ikoP -IVLEPIYWnSSnSKFGLVLYPQIGD-KLDIICPKVDKTVGQYEYYKVYMVDKDQADR-C 1kcw- ----------RMYSVNLPGLSMCAED-RVKWYLFGMGN---EVDVHAAFFHGQAL----- 1bqk- --ADFEVHMLNKMVFEpASLKVAP---GDTVTFIPTD------KGHNVETIKGMIP---- 1l4iA -----------GVALGATRVIYPEGQKQVQLAVTNNDDKS--SYLIQSWIENAEGKKD-- 1n0lA -----------AVSLDRTRAVFDGSEKSmTLDISNDNKQLP--YLAQAWIENENQEKII- 1plc- ----IDVLLGGSLAFVpSEFSISPGE-KIVFKNNAG-------FpHNIVFDE-DSIPS-- 2cbp- --AVYVVGWT--FNTESWPKGKRF-RAGDILLFNYNP------SMHNVVVVNQGGFST-C 1m56B ------------LLATDTAMVVPVNK-TVVVQVTGAD------VIHSWTVPA-------- 1hxmA ----------IELVPEHQTVPVSIGV-PATLRCSMKG-EAIGNYYINWYRKTQGNTMTFI 1jer- -STVHIVGWSVSSPNFYSWAAGKTFRVGDSLQFNFPA------NAHNVHEMTKQSFDACF 1nif- ---------PTHIVFNLTALTAAVGE-RVLVVHSQAN------RDTRPHLIGGHGDYVWA 1aozA ----------------PYIFHVSPKK-TYRIRIASTTA----LAALNFAIGNH-----QL 1gff2 ----------HSGLCHVVRIDETNPTNHHALSIAGSLSNVPADMIAFAIRFEVVVPTAV- 1ten- ----------LDAPSQIEVKDVTD--TTALITWFKPL-AEI--DGIELTYGIKDV----- QUERY TDGMASGLDKDYLKPDDSRVIAHTKLIGSGEKDSVTFDVSKLKEGEQYMFFCTFPGHSAL 1jzgA TDGMASGLDKDYLKPDDSRVIAHTKLIGSGEKDSVTFDVSKLKEGEQYMFFCTFPGHSAL 1qhqA TAAQNNA-DALFVPPDTPNALAWTAMLNAGESGSVTFRT--PAP-GTYLYICTFPGHYLG 1e30A A--V-------MPV--IDpIVAGTGFSPVPGYTNFTWH---PTA-GTYYYVCQIPGHAAG 1fwxA -------------------YGVAME-IGPQMTSSVTFVAAN---PGVYWYYCQWFALHME 1kv7A -----------------PGEVDGGGIIPPGGKRSVTLNVD--QPAATCWFHPHQGRQVAG 1cyx- -------------------LGSQIY-AMAGMQTRLHLI---ANEPGTYDGICAEIPGHSG 2cuaA -------------------TNINVE-VLPGEVSTVRYTFK--RP-GEYRIICNQYLGHQN 1fftB -------------------LGSQIY-AMAGMQTRLHLIAN---EPGTYDGISASYSGFSG 1ehkB -------------------TNINVEVLP-GEVSTVRYTFK--RP-GEYRIICNQYLGHQN 1bxaA ----------------GEAA-LKGPMMKKEQAYSLTFTEA-----GTYDYHCTP--HPF- 1ibyA -------------------FGVQE-VIKAGETKTISFTAD-KA--GAFTIWCQLHPKNIH 1ikoP T-----------IKKEnT---PLLnCARPDQDVKFTIKFQEFQKnKDYYIISTSnGVCQA 1kcw- ------------TNKNYRID--TI-NLFPATLFDAYMVA-QNP--GEWMLSCQNLNHLKG 1bqk- ----------------DGAEAFKSKIN---ENYKVTFTAP-----GVYGVKCTP--HYMG 1l4iA ----------------ARFVITpPLFMQGKKENTLRIIDATNMPESLFWVNVKAFAIV-- 1n0lA ---------------TGpVIATpPVQLEPGAKSmVRLSTTPDILPSLFYFNLREIALQ-- 1plc- ---------------GVDASKISMDLLN-AKGETFEV---ALSNKGEYSFYCSP--HQGG 2cbp- N-T-------------PAGA-KVYTS----GRDQIKLPK------GQSYFICNFPGHCQS 1m56B -------------------FGVKQDAV-PGRLAQLWFRAE---REGIFFGQCSELISHAY 1hxmA ---------YREKDIYGPGFNFQGDIDIAKNLAVLKIL--APSERDEGSYYCACDKLIFG 1jer- VNSD-----NDV------------ERT---SpVIERLDEL-----GMHYFVCTVGTHCSN 1nif- TG-------KFRNPPDLDQE---TWLIPGGTAGAAFYT---FRQPGVYAYVNHNLIEAFG 1aozA LVVEAD----GNYVQPFYTS--DI-DIYSGESYSVLITTD-QNPSENYWVSVGTRPNTPP 1gff2 ----------------PALYDVYPIETFISFKDAVTIDSHPRTVGNDVYAGIMLWS---- 1ten- ----------------PGDR-TTIDLTE--DENQYSIGN--LKPDTEYEVSLISRMSSNP QUERY MKGTLTLK 1jzgA MKGTLTLK 1qhqA MKGTLTVT 1e30A QFGKIVVK 1fwxA MRGRMLVE 1kv7A LAGLVVIE 1cyx- MKFKAIAT 2cuaA MFGTIVVK 1fftB MKFKAIAT 1ehkB MFGTIVVK 1bxaA MRGKVVVE 1ibyA LPGTLNVV 1ikoP MKILMKVG 1kcw- LQAFFQVQ 1bqk- MVGVVQVG 1l4iA SRIKLLYR 1n0lA TKIKLFYR 1plc- MVGKVTVN 2cbp- MKIAVNAL 1m56B MPITVKVV 1hxmA KGTRVTVE 1jer- QKLSINVV 1nif- AAGHFKVT 1aozA GLTLLNYL 1gff2 -------- 1ten- AKETFTT- [ALIGNMENTS] >1 1jzgA [b.6.1] "AZURIN" #Naa 128 start 1 end 128 SqID 100 % crms 0.8 Ssse 2585 Sdis 162932 Rdis 93.7 Z 57.54 : E1 E2 E3 H1 E4 H2 SecA : TTEEEEEB TTS BS SEEEE TT SEEEEEEE SS HHHH B EEEETTTHHHHH ExBuA:eeeeeebebebeeebeeeebebeeebeebbbebebeeeeeeeebbbbbbbbbeeeeeebb 1:AECSVDIQGNDQMQFNTNAITVDKSCKQFTVNLSHPGNLPKNVMGHNWVLSTAADMQGVV:60 ************************************************************ 1:AECSVDIQGNDQMQFNTNAITVDKSCKQFTVNLSHPGNLPKNVMGHNWVLSTAADMQGVV:60 SecB : EEEEEB TTS BS SEEEE TT SEEEEEEE SSS HHHH B EEEEGGGHHHHH ExBuB:eeeeeebebeeeeebeeeebebeeebeebebebebebeeeeeebbbbbbbbbeeebeebb : E1 E2 E3 H1 E4 H2 : E5 E6 E7 SecA :HHHHHH GGGTTS TT TT SEE B TT EEEEEEEGGGS TT EEEE STTTTTT ExBuA:eebeeeeeeeebbeeebeebebebebbbeeeebebebebeebeeeeebbbbbbbeebeee 61:TDGMASGLDKDYLKPDDSRVIAHTKLIGSGEKDSVTFDVSKLKEGEQYMFFCTFPGHSAL:120 ************************************************************ 61:TDGMASGLDKDYLKPDDSRVIAHTKLIGSGEKDSVTFDVSKLKEGEQYMFFCTFPGHSAL:120 SecB :HHHHTT GGGTTS TT TT EE B TT EEEEEEEGGG TT EEEE STTGGGT ExBuB:eebeeeeeeeebbeeebeebebebebbbeeeeeebebebeebeeeeebbbbbbbeebbee : E5 E6 E7 : E8 SecA :SEEEEEE ExBuA:bebebebe 121:MKGTLTLK:128 ******** 121:MKGTLTLK:128 SecB :SEEEEEE ExBuB:bebebebe : E8 // >2 1qhqA [b.6.1] "AURACYANIN" #Naa 139 start 15 end 139 SqID 29 % crms 2.1 Ssse 1414 Sdis 116237 Rdis 61.1 Z 37.73 : E1 - E2 E3 H1 E4 -- H2 SecA : TTEEEEEB T-TS BS SEEEE TT SEEEEEEE SS HHHH B EEEET--TTHH ExBuA:eeeeeebebeb-eeebeeeebebeeebeebbbebebeeeeeeeebbbbbbbbbe--eeee 1:AECSVDIQGND-QMQFNTNAITVDKSCKQFTVNLSHPGNLPKNVMGHNWVLSTA--ADMQ:57 * * ** ***** 15:PAQTVEVRAAPDALAFAQTSLSLPANT-VVRLDFVNQNNLG---VQHNWVLVNGGDDVAA:70 SecB : SEEEEEEB SSSSSBS SEEEEETT -EEEEEEEE SS --- B EEESSSHHHHH ExBuB:eeeeeebebbeeeeebeeeebebebeb-bbebbbbbebeee---bebbbbbbeeeeeebe : E1 E2 -E3 --- E4 H1 : - E5 E6 E7 SecA :HHHHHHHHH GGGTTS- TT TT SEE B TT EEEEEEEGGGS TT EEEE STT ExBuA:ebbeebeeeeeeeebb-eeebeebebebebbbeeeebebebebeebeeeeebbbbbbbee 58:GVVTDGMASGLDKDYL-KPDDSRVIAHTKLIGSGEKDSVTFDVSKLKEGEQYMFFCTFPG:116 * * * ** * * ** **** * ***** 71:AVNTAAQNNA-DALFVPPPDTPNALAWTAMLNAGESGSVTFRT--PAP-GTYLYICTFPG:126 SecB :HHHHHHHT G-GGTT TT TTEEEE B TTEEEEEEEE -- SS-EEEEEE STT ExBuB:ebbeebeebe-ebebbbeeebeebbbbbbbbeeeeeeebebeb--bee-eebbbbbbbee : - E5 E6 -- -E7 : - E8 SecA :TTT-TSEEEEEE ExBuA:bee-ebebebebe 117:HSA-LMKGTLTLK:128 * ****** 127:HYLAGMKGTLTVT:139 SecB :TTTTT EEEEEEE ExBuB:bbeeebebebebe : E8 // >3 1e30A [b.6.1] "RUSTICYANIN" #Naa 153 start 37 end 155 SqID 15 % crms 2.7 Ssse 1114 Sdis 74144 Rdis 35.2 Z 22.08 : E1 ---- ----- E2 E3 H1 E4 SecA :TTEEEEEB ----TTS BS -----SEEEE TT SEEEEEEE SS HHHH B EEEE ExBuA:eeeeebebe----beeebee-----eebebeeebeebbbebebeeeeeeeebbbbbbbbb 2:ECSVDIQGN----DQMQFNT-----NAITVDKSCKQFTVNLSHPGNLPKNVMGHNWVLST:52 * * * ** 37:TVHVVAAAVLPGFPFpSFEVHDKKNPTLEIPAGA-TVDVTFINTNKG----FGHSFDITK:91 SecB :EEEEEEEES TTS SS EEETTEES EEEE TT -EEEEEEEE TT---- EEES ExBuB:ebebbbbbbbeeeeebbbbbeeeeebebebeeeb-ebebbbbbbbee----ebbbbbbbe :E4 E5 E6 E7 -E8 ---- E9 : H2 E5 ----- E6 SecA :TTTHHHHHHHHHHH GGGTTS TT TT SEE B TT----- EEEEEEEGGGS TT ExBuA:eeeeeebbeebeeeeeeeebbeeebeebebebebbbee-----eebebebebeebeeeee 53:AADMQGVVTDGMASGLDKDYLKPDDSRVIAHTKLIGSG-----EKDSVTFDVSKLKEGEQ:107 * * * 92:K-GPp--YA--V-------MPV--IDpIVAGTGFSPVPKDGKFGYTNFTWH---PTA-GT:133 SecB : - SS-- --S-------S -- SEEEEB BTTEEEEEEEEE --- S-EE ExBuB:e-eee--be--e-------ebe--beebebbbbebeebeeeebbbbebebe---bee-ee : - -- -- ------- -- E10 E11 --- -E1 :E7 - E8 SecA :EEEE STTTTT-TSEEEEEE ExBuA:bbbbbbbeebee-ebebebebe 108:YMFFCTFPGHSA-LMKGTLTLK:128 * * *** * * * 134:YYYVCQIPGHAATGQFGKIVVK:155 SecB :EEEE STTTTTTT EEEEEE ExBuB:bbbbbbbeebbeeebebebebe :2 E13 // >4 1fwxA [b.69.3] "NITROUS OXIDE REDUCTASE" #Naa 591 start 486 end 579 SqID 18 % crms 2.0 Ssse 994 Sdis 61265 Rdis 3.7 Z 18.85 : E1 E2 E3 H1 E4 H2 SecA :TTEEEEEB TTS BS SEEEE TT SEEEEEEE SS HHHH B EEEETTTHHHHHH ExBuA:eeeeebebebeeebeeeebebeeebeebbbebebeeeeeeeebbbbbbbbbeeeeeebbe 2:ECSVDIQGNDQMQFNTNAITVDKSCKQFTVNLSHPGNLPKNVMGHNWVLSTAADMQGVVT:61 * * ** ** * 486:KVRVYMSSV-ApSFSIESFTVKEGD-EVTVIVTNLDEID--DLTHGFTMGN---------:532 SecB :EEEEEEEEE-TTEES SEEEEETT -EEEEEEEE ST--T EEEEETT--------- ExBuB:ebbbbbbbe-beebbbeebebeeeb-ebbbbbbbebeee--ebbbbbbbee--------- :E33 - E34 E35 -E36 -- E37 --------- : E5 E6 E7 -- SecA :HHHHH GGGTTS TT TT SEE B TT EEEEEEEGGGS TT EEEE ST--TTTT ExBuA:ebeeeeeeeebbeeebeebebebebbbeeeebebebebeebeeeeebbbbbbbe--ebee 62:DGMASGLDKDYLKPDDSRVIAHTKLIGSGEKDSVTFDVSKLKEGEQYMFFCTFP--GHSA:119 ** **** * * :------------------YGVAME-IGPQMTSSVTFVAAN---PGVYWYYCQWFCHALHM:570 SecB :------------------TTEEEE-E TT EEEEEEE S--- EEEEEE S STT T ExBuB:------------------bebbbb-bbbbbbbbbebebee---eeebebebeeebeeebe :------------------ E38 - E39 --- E40 : E8 SecA :TSEEEEEE ExBuA:ebebebebe 120:LMKGTLTLK:128 * * 571:EMRGRMLVE:579 SecB :T EEEEEEE ExBuB:ebebebebe : E41 // >5 1kv7A [b.6.1] "PROBABLE BLUE-COPPER PROTEIN YACK" #Naa 463 start 43 end 163 SqID 14 % crms 3.4 Ssse 811 Sdis 57674 Rdis 4.8 Z 15.73 : - E1 ----------- ---- E2 E3 H1 SecA : -TTEEEEEB TT-----------S BS---- SEEEE TT SEEEEEEE SS HHHH ExBuA:e-eeeeebebebe-----------eebe----eeebebeeebeebbbebebeeeeeeeeb 1:A-ECSVDIQGNDQ-----------MQFN----TNAITVDKSCKQFTVNLSHPGNLPKNVM:44 * * ** 43:DARNRIQLTIGAGQSTFGGKTATTWGYNGNLLGPAVKLQRGK-AVTVDIYNQL-----TE:96 SecB : TTSEEEEEEEEEEEEETTEEEEEEEESSSSB EEEEETT -EEEEEEEE S-----SS ExBuB:eeeeebebebbebebebeeeebebbbbeeeebbbbbebeeee-ebbbbbebeb-----ee : E2 E3 E4 -E5 ----- : E4 H2 E5 -- E6 SecA : B EEEETTTHHHHHHHHHHH GGGTTS TT TT SEE -- B TT EEEEEEEGGGS ExBuA:bbbbbbbbeeeeeebbeebeeeeeeeebbeeebeebebeb--ebbbeeeebebebebeeb 45:GHNWVLSTAADMQGVVTDGMASGLDKDYLKPDDSRVIAHT--KLIGSGEKDSVTFDVSKL:102 * * * *** * 97:ETTLHWHGLEV----------------------PGEVDGGPQGIIPPGGKRSVTLNVD--:132 SecB : B EEET ---------------------- GGGS TT B TT EEEEEEE -- ExBuB:ebbbbbbbbbb----------------------ebebbbbbeeebeeeeeeebebebe-- : E6 ---------------------- E7 -- : E7 ---- - E8 SecA : TT EEEE S----TTTTT-TSEEEEEE ExBuA:eeeeebbbbbbb----eebee-ebebebebe 103:KEGEQYMFFCTF----PGHSA-LMKGTLTLK:128 * * * 133:QPAATCWFHPHQHGKTGRQVAMGLAGLVVIE:163 SecB :S SEEEEEE TTTHHHHHHTT EEEEEE ExBuB:bebbbbbbbbbbeeebbebbbbbbbbbbbbb : E8 H1 E9 // >6 1cyx- [b.6.1] "CYOA" #Naa 158 start 126 end 225 SqID 10 % crms 2.3 Ssse 911 Sdis 51366 Rdis 23.7 Z 15.02 : E1 ---------- E2 E3 H1 E4 SecA :TTEEEEEB TTS BS ----------SEEEE TT SEEEEEEE SS HHHH B EEE ExBuA:eeeeebebebeeebee----------eebebeeebeebbbebebeeeeeeeebbbbbbbb 2:ECSVDIQGNDQMQFNT----------NAITVDKSCKQFTVNLSHPGNLPKNVMGHNWVLS:51 * * * 126:PITIEVVSM-DWKWFFIYPEQGIATVNEIAFPANT-PVYFKVTSNS------VMHSFFIP:177 SecB : EEEEEEEE-TTEEEEEETTTTEEEESEEEEETTS- EEEEEEESS------S EEEEEG ExBuB:ebebbbbbb-bbbbbbbbeeeebbbbbbbbbbbeb-ebebebbbbe------eebbbebe : E1 - E2 E3 E4 - E5 ------ E6 : H2 E5 E6 E7 SecA :ETTTHHHHHHHHHHH GGGTTS TT TT SEE B TT EEEEEEEGGGS TT EEEE ExBuA:beeeeeebbeebeeeeeeeebbeeebeebebebebbbeeeebebebebeebeeeeebbbb 52:TAADMQGVVTDGMASGLDKDYLKPDDSRVIAHTKLIGSGEKDSVTFDVSKLKEGEQYMFF:111 * * * 178:R---------------------------LGSQIY-AMAGMQTRLHLI---ANEPGTYDGI:206 SecB :G---------------------------GTEEEE-E TT EEEEE --- SSSEEEEEE ExBuB:e---------------------------bebeee-beebeebebebe---beeeeebebe : --------------------------- E7 - E8 --- E9 : -- E8 SecA : ST--TTTTTSEEEEEE ExBuA:bbbe--ebeeebebebebe 112:CTFP--GHSALMKGTLTLK:128 * ** 207:CAEICGPGHSGMKFKAIAT:225 SecB :E S STTSTT EEEEEE ExBuB:beeebeebeebbebebebb : E10 // >7 2cuaA [b.6.1] "CUA" #Naa 122 start 78 end 167 SqID 17 % crms 2.3 Ssse 873 Sdis 49362 Rdis 29.9 Z 14.06 : E1 E2 E3 H1 E4 H2 SecA :TTEEEEEB TTS BS SEEEE TT SEEEEEEE SS HHHH B EEEETTTHHHHHH ExBuA:eeeeebebebeeebeeeebebeeebeebbbebebeeeeeeeebbbbbbbbbeeeeeebbe 2:ECSVDIQGNDQMQFNTNAITVDKSCKQFTVNLSHPGNLPKNVMGHNWVLSTAADMQGVVT:61 * * * * * * 78:QYTVYVLAF-AfGYQpNpIEVPQGA-EIVFKITSPD------VIHGFHVEG---------:120 SecB :EEEEEEEEE-TTEEESSSEEEETTS-EEEEEEEBSS------S EEEEETT--------- ExBuB:eebbbbbbe-eebbbbeebebeeeb-ebbbbbbbbe------eebbbebee--------- :E2 - E3 E4 -E5 ------ E6 --------- : E5 E6 E7 -- SecA :HHHHH GGGTTS TT TT SEE B TT EEEEEEEGGGS TT EEEE ST--TTTT ExBuA:ebeeeeeeeebbeeebeebebebebbbeeeebebebebeebeeeeebbbbbbbe--ebee 62:DGMASGLDKDYLKPDDSRVIAHTKLIGSGEKDSVTFDVSKLKEGEQYMFFCTFP--GHSA:119 ** * * * :------------------TNINVE-VLPGEVSTVRYTFK--RP-GEYRIICNQYCGLGHQ:158 SecB :------------------SS EEE-E BTB EEEEEE --S -EEEEEE S STTST ExBuB:------------------bebebe-beebebbebeeebe--ee-eebebbbeeebeeeee :------------------ E7 - E8 -- -E9 : E8 SecA :TSEEEEEE ExBuA:ebebebebe 120:LMKGTLTLK:128 * ** * 159:NMFGTIVVK:167 SecB :T EEEEEEE ExBuB:ebebebebe : E10 // >8 1fftB [f.2.1] "UBIQUINOL OXIDASE" #Naa 257 start 126 end 225 SqID 8 % crms 2.4 Ssse 526 Sdis 48948 Rdis 13.3 Z 13.87 : E1 ---------- E2 E3 H1 E4 SecA :TTEEEEEB TTS BS ----------SEEEE TT SEEEEEEE SS HHHH B EEE ExBuA:eeeeebebebeeebee----------eebebeeebeebbbebebeeeeeeeebbbbbbbb 2:ECSVDIQGNDQMQFNT----------NAITVDKSCKQFTVNLSHPGNLPKNVMGHNWVLS:51 * * 126:PITIEVVSM-DWKWFFIYPEQGIATVNEIAFPANT-PVYFKVTSNS------VMNSFFIP:177 SecB : EEEEE -TTS EEE TTT EEESB SSS-EEEEEE BSS------S EEEEEG ExBuB:bbebbbbbb-eebbbbbbeeeebbbbbbbbbbbeb-ebbbebbbbe------eebbbbbe : E1 - E2 E3 -E4 ------ E5 : H2 E5 E6 E7 SecA :ETTTHHHHHHHHHHH GGGTTS TT TT SEE B TT EEEEEEEGGGS TT EEEE ExBuA:beeeeeebbeebeeeeeeeebbeeebeebebebebbbeeeebebebebeebeeeeebbbb 52:TAADMQGVVTDGMASGLDKDYLKPDDSRVIAHTKLIGSGEKDSVTFDVSKLKEGEQYMFF:111 * * * 178:R---------------------------LGSQIY-AMAGMQTRLHLIAN---EPGTYDGI:206 SecB :G---------------------------GTEEEE-E BTS EEEEEE ---S B EEB ExBuB:e---------------------------bebeee-beebeebebebebe---eeeebebe : --------------------------- E6 - E7 --- E8 : -- E8 SecA : STT--TTTTSEEEEEE ExBuA:bbbee--beeebebebebe 112:CTFPG--HSALMKGTLTLK:128 ** 207:SASYSGPGFSGMKFKAIAT:225 SecB : S STTTTT EE B ExBuB:bbeeeeebeebbebebebe : E9 // >9 1ehkB [f.2.1] "BA3-TYPE CYTOCHROME-C OXIDASE" #Naa 166 start 78 end 167 SqID 17 % crms 2.4 Ssse 875 Sdis 47549 Rdis 22.4 Z 13.20 : E1 E2 E3 H1 E4 H2 SecA :TTEEEEEB TTS BS SEEEE TT SEEEEEEE SS HHHH B EEEETTTHHHHHH ExBuA:eeeeebebebeeebeeeebebeeebeebbbebebeeeeeeeebbbbbbbbbeeeeeebbe 2:ECSVDIQGNDQMQFNTNAITVDKSCKQFTVNLSHPGNLPKNVMGHNWVLSTAADMQGVVT:61 * * * * * * 78:QYTVYVLAF-AfGYQpNpIEVPQGA-EIVFKITSPD------VIHGFHVEG---------:120 SecB :EEEEEEEEE-TTEEESSSEEEETTS-EEEEEEE SS------S EEEEETT--------- ExBuB:eebbebbbe-eebbebeebebeeeb-ebbbbbbbbe------eebbbebee--------- :E2 - E3 E4 -E5 ------ E6 --------- : E5 E6 E7 -- SecA :HHHHH GGGTTS TT TT SEE B TT EEEEEEEGGGS TT EEEE ST--TTTT ExBuA:ebeeeeeeeebbeeebeebebebebbbeeeebebebebeebeeeeebbbbbbbe--ebee 62:DGMASGLDKDYLKPDDSRVIAHTKLIGSGEKDSVTFDVSKLKEGEQYMFFCTFP--GHSA:119 ** * * * :------------------TNINVEVLP-GEVSTVRYTFK--RP-GEYRIICNQYCGLGHQ:158 SecB :------------------SS EEEE T-TB EEEEEE --S -EEEEEE S STTST ExBuB:------------------bebebebee-bbbbbbeeebe--ee-eebebebeeebbebee :------------------ E7 - E8 -- -E9 : E8 SecA :TSEEEEEE ExBuA:ebebebebe 120:LMKGTLTLK:128 * ** * 159:NMFGTIVVK:167 SecB :T EEEEEEE ExBuB:ebebebbbe : E10 // >10 1bxaA [b.6.1] "AMICYANIN" #Naa 105 start 17 end 105 SqID 20 % crms 3.7 Ssse 1081 Sdis 43728 Rdis 30.1 Z 11.16 : E1 E2 E3 H1 E4 H2 SecA : TTEEEEEB TTS BS SEEEE TT SEEEEEEE SS HHHH B EEEETTTHHHHH ExBuA:eeeeeebebebeeebeeeebebeeebeebbbebebeeeeeeeebbbbbbbbbeeeeeebb 1:AECSVDIQGNDQMQFNTNAITVDKSCKQFTVNLSHPGNLPKNVMGHNWVLSTAADMQGVV:60 * * * * ** * ** 17:ADGAIVVDIA-KMKYETPELHV---KVGDTVTWINRE-----AMPHNVHFVA-GVL----:62 SecB : TT EEEEEE-TTEESSSEEEE--- TT EEEEEE S-----SS B EE T-TTS---- ExBuB:eeeeeebebb-eeebeeeebeb---eeebebbbbbee-----eeebbbbbee-eeb---- : E3 - E4 E5 --- E6 ----- E7 - ---- : E5 E6 E7 SecA :HHHHHH GGGTTS TT TT SEE B TT EEEEEEEGGGS TT EEEE STTTTTT ExBuA:eebeeeeeeeebbeeebeebebebebbbeeeebebebebeebeeeeebbbbbbbeebeee 61:TDGMASGLDKDYLKPDDSRVIAHTKLIGSGEKDSVTFDVSKLKEGEQYMFFCTFPGHSAL:120 * ** * ** * :----------------GEAA-LKGPMMKKEQAYSLTFTEA-----GTYDYHCTP--HPF-:97 SecB :----------------SSS -EE B TTEEEEEEE S -----EEEEEE SS-- TT- ExBuB:----------------beee-bebeebeeeebbbbbbeee-----eebebbbee--eee- :---------------- -E8 E9 -----E10 -- - : E8 SecA :SEEEEEE ExBuA:bebebebe 121:MKGTLTLK:128 * * 98:MRGKVVVE:105 SecB : EEEEEE ExBuB:bebebbbe : E11 // >11 1ibyA [b.6.1] "NITROSOCYANIN" #Naa 112 start 31 end 111 SqID 14 % crms 2.6 Ssse 791 Sdis 38921 Rdis 25.2 Z 10.55 : E2 E3 H1 E4 H2 SecA :TTS BS SEEEE TT SEEEEEEE SS HHHH B EEEETTTHHHHHHHHHHH GGG ExBuA:beeebeeeebebeeebeebbbebebeeeeeeeebbbbbbbbbeeeeeebbeebeeeeeee 11:DQMQFNTNAITVDKSCKQFTVNLSHPGNLPKNVMGHNWVLSTAADMQGVVTDGMASGLDK:70 * * * 31:FNVLNEpETLVVKKGD-AVKVVVENKS-----PISEGFSIDA------------------:66 SecB :EEEEEES EEEEETT -EEEEEEEE S-----SS EEEEEGG------------------ ExBuB:eebebeeeebebeeee-ebebbbebeb-----eeebbbbbee------------------ : E3 -E4 ----- E5 ------------------ : E5 E6 E7 E8 SecA :TTS TT TT SEE B TT EEEEEEEGGGS TT EEEE STTTTTTSEEEEEE ExBuA:ebbeeebeebebebebbbeeeebebebebeebeeeeebbbbbbbeebeeebebebebe 71:DYLKPDDSRVIAHTKLIGSGEKDSVTFDVSKLKEGEQYMFFCTFPGHSALMKGTLTLK:128 * ** * * *** :---------FGVQE-VIKAGETKTISFTAD-KA--GAFTIWCQLHPKNIHLPGTLNVV:111 SecB :---------GTEEE-EE TT EEEEEEE -S --EEEEEB SSS TTTB EEEEEE ExBuB:---------bebee-ebeeeeeeebebebe-ee--eebebebeeeeeeebeebebebe :--------- E6 - E7 - --E8 E9 // >12 1ikoP [b.6.1] "EPHRIN-B2" #Naa 141 start 31 end 168 SqID 8 % crms 4.2 Ssse 935 Sdis 53117 Rdis 27.8 Z 10.20 : E1 ---- E2 E3 - H1 E4 H SecA :TTEEEEEB TTS BS---- SEEEE TT SEEEEEEE S-S HHHH B EEEETTTH ExBuA:eeeeebebebeeebe----eeebebeeebeebbbebebee-eeeeeebbbbbbbbbeeee 2:ECSVDIQGNDQMQFN----TNAITVDKSCKQFTVNLSHPG-NLPKNVMGHNWVLSTAADM:56 * 31:IVLEPIYWnSSnSKFLPGQGLVLYPQIGD-KLDIICPKVDSKTVGQYEYYKVYMVDKDQA:89 SecB : B EE STT TTSBTTTBEEE TT -EEEEE SSS S BEEEEEE HHHH ExBuB:eeeeebebeeeeeebeeeebbeeebeeeb-ebbbbbbebeeeeeeeebbbbbbebeeebb : E1 E2 -E3 E4 H1 :2 E5 E6 --------- SecA :HHHHHHHHHH GGGTTS TT TT SEE B TT EEEEEEEGG---------GS TT ExBuA:eebbeebeeeeeeeebbeeebeebebebebbbeeeebebebebe---------ebeeeee 57:QGVVTDGMASGLDKDYLKPDDSRVIAHTKLIGSGEKDSVTFDVS---------KLKEGEQ:107 * * * 90:DR-CT-----------IKKEnT---PLLnCARPDQDVKFTIKFQEFSPnLWGLEFQKnKD:134 SecB :HH-TB----------- TT --- SEEE TTS EEEEE SS SSTT TTEE ExBuB:ee-bb-----------beeeee---ebbebeebeeeeeeebebeeebeeeeeeebeeeee : - ----------- --- E5 E6 E7 :E7 ----------- -- E8 SecA :EEEE STT-----------TTT--TSEEEEEE ExBuA:bbbbbbbee-----------bee--ebebebebe 108:YMFFCTFPG-----------HSA--LMKGTLTLK:128 * * * ** 135:YYIISTSnGSLEGLDnQEGGVCQTRAMKILMKVG:168 SecB :EEEE BSGGGTT BSHHHHHS EEEEEET ExBuB:bbbbbbbebeeebbeeeebbbbeeebbebebebb : H2 E8 // >13 1kcw- [b.6.1] "CERULOPLASMIN" #Naa 1017 start 239 end 336 SqID 11 % crms 4.8 Ssse 812 Sdis 42116 Rdis 0.9 Z 9.94 : ------ E2 E3 H1 E4 H2 SecA :TTS BS------ SEEEE TT SEEEEEEE SS HHHH B EEEETTTHHHHHHHHH ExBuA:beeebe------eeebebeeebeebbbebebeeeeeeeebbbbbbbbbeeeeeebbeebe 11:DQMQFN------TNAITVDKSCKQFTVNLSHPGNLPKNVMGHNWVLSTAADMQGVVTDGM:64 * * ** * * * 239:RMYSVNGYTFGSLPGLSMCAED-RVKWYLFGMGN---EVDVHAAFFHGQAL---------:285 SecB :EEEESSS SS EEETTE-EEEEEEE S---TT EEEEETTS --------- ExBuB:ebbbbbbbbbbbbeebebbbeb-ebbbbbbbbbe---eebbbbbbbbbbbb--------- :E14 E15 E-16 --- E17 --------- : E5 E6 E7 - E8 SecA :HH GGGTTS TT TT SEE B TT EEEEEEEGGGS TT EEEE STTTTT-TSEE ExBuA:eeeeeeebbeeebeebebebebbbeeeebebebebeebeeeeebbbbbbbeebee-ebeb 65:ASGLDKDYLKPDDSRVIAHTKLIGSGEKDSVTFDVSKLKEGEQYMFFCTFPGHSA-LMKG:123 * * * :--------TNKNYRID--TI-NLFPATLFDAYMVA-QNP--GEWMLSCQNLNHLKAGLQA:331 SecB :-------- SSS S--EE-EE TT EEEEEEEE- S --EEEEEEE HHHHHT EE ExBuB:--------beeebbbb--bb-bbbbbbbbbbebeb-bbe--ebbbbbbbbbebbbbbbbb :-------- --E1-8 E19 - --E20 H4 E2 : SecA :EEEE ExBuA:ebebe 124:TLTLK:128 332:FFQVQ:336 SecB :EEEEE ExBuB:bbebe :1 // >14 1bqk- [b.6.1] "PSEUDOAZURIN" #Naa 124 start 1 end 93 SqID 23 % crms 3.6 Ssse 820 Sdis 38793 Rdis 23.1 Z 9.24 : E1 ----- E2 E3 H1 E4 H2 SecA :TEEEEEB TT-----S BS SEEEE TT SEEEEEEE SS HHHH B EEEETTTHH ExBuA:eeeebebebe-----eebeeeebebeeebeebbbebebeeeeeeeebbbbbbbbbeeeee 3:CSVDIQGNDQ-----MQFNTNAITVDKSCKQFTVNLSHPGNLPKNVMGHNWVLSTAADMQ:57 * * * ** *** 1:ADFEVHMLNKGKDGAMVFEpASLKVAP---GDTVTFIPTD------KGHNVETIKGMIP-:50 SecB : EEEEEEEEEETTEEEEEESSEEEE T---T EEEEE SS------SS EE TT S - ExBuB:eeeebebbeeeeeeebbbeeeebebee---ebbbbbbbee------eebbbebbeebeb- : E1 E2 E3 --- E4 ------ E5 - : E5 E6 E7 SecA :HHHHHHHHH GGGTTS TT TT SEE B TT EEEEEEEGGGS TT EEEE STTT ExBuA:ebbeebeeeeeeeebbeeebeebebebebbbeeeebebebebeebeeeeebbbbbbbeeb 58:GVVTDGMASGLDKDYLKPDDSRVIAHTKLIGSGEKDSVTFDVSKLKEGEQYMFFCTFPGH:117 * * * *** * ** * :-------------------DGAEAFKSKIN---ENYKVTFTAP-----GVYGVKCTP--H:81 SecB :-------------------TT B TT--- EEEE S -----EEEEEE TT--T ExBuB:-------------------eeeeebebeee---eeeebebebe-----bbbbbbbee--b :------------------- --- E6 -----E7 -- : - E8 SecA :T-TTSEEEEEE ExBuA:e-eebebebebe 118:S-ALMKGTLTLK:128 * * 82:YGMGMVGVVQVG:93 SecB :GGGT EEEEEES ExBuB:beebbbbbbbbb : E8 // >15 1l4iA [b.1.11] "SFAE PROTEIN" #Naa 189 start 1 end 116 SqID 6 % crms 3.7 Ssse 568 Sdis 41394 Rdis 15.0 Z 8.68 : E2 E3 H1 E4 H2 SecA :TS BS SEEEE TT SEEEEEEE SS HHHH B EEEETTTHHHHHHHHHHH GGGT ExBuA:eeebeeeebebeeebeebbbebebeeeeeeeebbbbbbbbbeeeeeebbeebeeeeeeee 12:QMQFNTNAITVDKSCKQFTVNLSHPGNLPKNVMGHNWVLSTAADMQGVVTDGMASGLDKD:71 ** * 1:GVALGATRVIYPEGQKQVQLAVTNNDDKS--SYLIQSWIENAEGKKD-------------:45 SecB : EEES SEEEEETT SEEEEEEEE TT --EEEEEEEEEETTS B ------------- ExBuB:eeebeeebbebeeeeeebebebbbeeeee--ebebebebbbeeeeeb------------- : E1 E2 E3 --E4 ------------- : E5 - E6 -- --- E7 ------- SecA :TS TT TT SEE -B TT EEEEEEEGGGS-- T---T EEEE S-------TTTT ExBuA:bbeeebeebebebeb-bbeeeebebebebeeb--ee---eeebbbbbbb-------eebe 72:YLKPDDSRVIAHTKL-IGSGEKDSVTFDVSKL--KE---GEQYMFFCTF-------PGHS:118 ** :-----ARFVITpPLFSMQGKKENTLRIIDATNGQMPEDRESLFWVNVKAIPAMDLQFAIV:108 SecB :-----SSEEEESSEEEEESSEEEEEEEEE TT S SSS EEEEEEEEEEE EE ExBuB:-----eebebeeeebebebeeeeebebeeebeeebeeeebbbbbbbbebeeeeeeeeeee :----- E5 E6 E7 E8 E9 : E8 SecA :TTSEEEEEE ExBuA:eebebebebe 119:ALMKGTLTLK:128 * :--SRIKLLYR:116 SecB :--EEEEEEEE ExBuB:--eebbbbbb :-- // >16 1n0lA [b.1.11] "CHAPERONE PROTEIN PAPD" #Naa 215 start 1 end 116 SqID 11 % crms 3.9 Ssse 553 Sdis 42108 Rdis 12.9 Z 8.55 : E2 E3 H1 E4 H2 SecA :TS BS SEEEE TT SEEEEEEE SS HHHH B EEEETTTHHHHHHHHHHH GGGT ExBuA:eeebeeeebebeeebeebbbebebeeeeeeeebbbbbbbbbeeeeeebbeebeeeeeeee 12:QMQFNTNAITVDKSCKQFTVNLSHPGNLPKNVMGHNWVLSTAADMQGVVTDGMASGLDKD:71 * * * * * 1:AVSLDRTRAVFDGSEKSmTLDISNDNKQLP--YLAQAWIENENQEKII------------:46 SecB : EEES SEEEEETTSSEEEEEEEE SS --EEEEEEEE TTS EES------------ ExBuB:ebebeeebbebeeeeeeeebebbbeeeeee--bebebbbbbeeeeeee------------ : E1 E2 E3 --E4 E5 ------------ : E5 - E6 -- ---- E7 --------- SecA :TS TT TT SEE -B TT EEEEEEEGGGS --TT---- EEEE ST--------- ExBuA:bbeeebeebebebeb-bbeeeebebebebeebe--ee----eebbbbbbbe--------- 72:YLKPDDSRVIAHTKL-IGSGEKDSVTFDVSKLK--EG----EQYMFFCTFP---------:115 * * * * :----TGpVIATpPVQRLEPGAKSmVRLSTTPDISKLPQDRESLFYFNLREIPPRSEKANV:102 SecB :----SSSEEEE SEEEE TT EEEEEEEE GGGGGS SSS EEEEEEEEEE SSSS ExBuB:----ebebebeeeebebeeeeeeebebbeeeebeeeeeeebbbbbbbbebebeeeeeeee :---- E6 E7 E8 E9 :--- E8 SecA :---TTTTTSEEEEEE ExBuA:---ebeeebebebebe :---GHSALMKGTLTLK:128 * * 103:LQIALQ--TKIKLFYR:116 SecB : E--EEEEEEEE ExBuB:eeeeee--eebbbbbb : E--10 // >17 1plc- [b.6.1] "PLASTOCYANIN (CU2+, PH 6.0)" #Naa 99 start 1 end 99 SqID 15 % crms 4.2 Ssse 796 Sdis 38848 Rdis 28.0 Z 8.16 :1 --- E2 E3 H1 E4 H2 SecA :EEEEB ---TTS BS SEEEE TT SEEEEEEE SS HHHH B EEEETTTHHHHHH ExBuA:eebebe---beeebeeeebebeeebeebbbebebeeeeeeeebbbbbbbbbeeeeeebbe 5:VDIQGN---DQMQFNTNAITVDKSCKQFTVNLSHPGNLPKNVMGHNWVLSTAADMQGVVT:61 * * ** * 1:IDVLLGADDGSLAFVpSEFSISPGE-KIVFKNNAG-------FpHNIVFDE-DSIPS---:48 SecB : EEEES TT S EESSEEEE TT -EEEEEE SS------- B EE T-TSS T--- ExBuB:eebebbbeeeeeebeeeebebeeee-ebbbebbbe-------eebbbbbee-eebbe--- : E1 E2 E3 -E4 ------- E5 - --- : E5 --- E6 E7 SecA :HHHHH GGGTTS TT TT SEE --- B TT EEEEEEEGGGS TT EEEE STTTT ExBuA:ebeeeeeeeebbeeebeebebeb---ebbbeeeebebebebeebeeeeebbbbbbbeebe 62:DGMASGLDKDYLKPDDSRVIAHT---KLIGSGEKDSVTFDVSKLKEGEQYMFFCTFPGHS:118 * * * * * * :--------------GVDASKISMSEEDLLN-AKGETFEV---ALSNKGEYSFYCSP--HQ:88 SecB :--------------T HHHH TT B -STT EEEE---E S EEEEEE GG--GT ExBuB:--------------ebebeebbbeeeeebe-eeeeeeeb---ebeeeeebebbbee--be :-------------- H1 - E6 --- E7 -- : - E8 SecA :T-TSEEEEEE ExBuA:e-ebebebebe 119:A-LMKGTLTLK:128 * * * 89:GAGMVGKVTVN:99 SecB :TTT EEEEEE ExBuB:eeebebebebe : E8 // >18 2cbp- [b.6.1] "CUCUMBER BASIC PROTEIN" #Naa 96 start 1 end 96 SqID 14 % crms 3.9 Ssse 734 Sdis 37563 Rdis 27.8 Z 7.77 : E1 ---- E2 E3 H1 E4 H2 SecA :TEEEE----EB TTS BS SEEEE TT SEEEEEEE SS HHHH B EEEETTTHHH ExBuA:eeeeb----ebebeeebeeeebebeeebeebbbebebeeeeeeeebbbbbbbbbeeeeee 3:CSVDI----QGNDQMQFNTNAITVDKSCKQFTVNLSHPGNLPKNVMGHNWVLSTAADMQG:58 ** * 1:AVYVVGGSGGWT--FNTESWPKGKRF-RAGDILLFNYNP------SMHNVVVVNQGGFST:51 SecB : EEETTGGG S --TT TTTTTT B- TT EEEEE T------TT EEEE HHHHHH ExBuB:eeeebeeeebbe--eebeebbeeeeb-eeebebbbebee------eebbbbebeeebbee : E1 -- - E2 ------ E3 H1 : E5 E6 E7 SecA :HHHHHHHH GGGTTS TT TT SEE B TT EEEEEEEGGGS TT EEEE STTTT ExBuA:bbeebeeeeeeeebbeeebeebebebebbbeeeebebebebeebeeeeebbbbbbbeebe 59:VVTDGMASGLDKDYLKPDDSRVIAHTKLIGSGEKDSVTFDVSKLKEGEQYMFFCTFPGHS:118 * * * * **** :-CN-T-------------PAGA-KVYTS----GRDQIKLPK------GQSYFICNFPGHC:85 SecB :-T - ------------- TT -EEE S----SEEEEE S------EEEEEE STTTG ExBuB:-be-e-------------eeee-eeeee----bebebebee------eebbbbbeeeebb :- - ------------- -E4 ---- E5 ------E6 : - E8 SecA :TT-SEEEEEE ExBuA:ee-bebebebe 119:AL-MKGTLTLK:128 ** 86:QSGMKIAVNAL:96 SecB :GGT EEEEEE ExBuB:eebbbbebebe : E7 // >19 1m56B [f.2.1] "CYTOCHROME C OXIDASE" #Naa 260 start 191 end 270 SqID 14 % crms 3.9 Ssse 870 Sdis 31635 Rdis 8.3 Z 7.66 : E2 E3 H1 E4 H2 SecA :S BS SEEEE TT SEEEEEEE SS HHHH B EEEETTTHHHHHHHHHHH GGGTT ExBuA:eebeeeebebeeebeebbbebebeeeeeeeebbbbbbbbbeeeeeebbeebeeeeeeeeb 13:MQFNTNAITVDKSCKQFTVNLSHPGNLPKNVMGHNWVLSTAADMQGVVTDGMASGLDKDY:72 * * * * * 191:LLATDTAMVVPVNK-TVVVQVTGAD------VIHSWTVPA--------------------:223 SecB :TT BSS EEEETT -EEEEEEEESS------S EEEEEGG-------------------- ExBuB:ebbbebbbbbbbee-bbbbebbbee------eebbbbbeb-------------------- : E4 -E5 ------ E6 -------------------- : E5 E6 E7 -- E8 SecA :S TT TT SEE B TT EEEEEEEGGGS TT EEEE ST--TTTTTSEEEEEE ExBuA:beeebeebebebebbbeeeebebebebeebeeeeebbbbbbbe--ebeeebebebebe 73:LKPDDSRVIAHTKLIGSGEKDSVTFDVSKLKEGEQYMFFCTFP--GHSALMKGTLTLK:128 * * * * * * :-------FGVKQDAV-PGRLAQLWFRAE---REGIFFGQCSELCGISHAYMPITVKVV:270 SecB :-------GTEEEEE -TT EEEEEE S---S EEEEE S SSGGGS EEEEEE ExBuB:-------bebeeebe-eeeeeebbbebe---eebbbbbebeeebeebeeebbbbbbbb :------- E7 - E8 --- E9 E10 // >20 1hxmA [b.1.1] "GAMMA-DELTA T-CELL RECEPTOR" #Naa 206 start 2 end 118 SqID 10 % crms 4.2 Ssse 524 Sdis 43497 Rdis 14.9 Z 7.21 : E2 E3 H1 E4 H2 SecA :TTS BS SEEEE TT SEEEEEEE SS HHHH B EEEETTTHHHHHHHHHHH GGG ExBuA:beeebeeeebebeeebeebbbebebeeeeeeeebbbbbbbbbeeeeeebbeebeeeeeee 11:DQMQFNTNAITVDKSCKQFTVNLSHPGNLPKNVMGHNWVLSTAADMQGVVTDGMASGLDK:70 * * * * ** * 2:IELVPEHQTVPVSIGV-PATLRCSMKG-EAIGNYYINWYRKTQGNTMTFI---------Y:50 SecB : EEES SEEEEETT - EEEEEEE S-S GGGSEEEEEEEESSS SEEE---------E ExBuB:eebebeeeebebebee-ebebebebee-eebeebebbbebebeeeeeeeb---------b : E1 E2 - E3 - E4 E5 --------- : -- E5 E6 E7 ---------- SecA :TTS TT TT --SEE B TT EEEEEEEGGGS TT EEEE ST----------TTT ExBuA:ebbeeebeeb--ebebebbbeeeebebebebeebeeeeebbbbbbbe----------ebe 71:DYLKPDDSRV--IAHTKLIGSGEKDSVTFDVSKLKEGEQYMFFCTFP----------GHS:118 * * 51:REKDIYGPGFKDNFQGDIDIAKNLAVLKIL--APSERDEGSYYCACDTLGMGGEYTDKLI:108 SecB :ETTTEE TTTTTTEEEEEEGGGTEEEEEES--S GGG EEEEEEEE SSS E ExBuB:ebeeebbeebeeebebebeeeeeebbbebe--ebbeebebebbbbbbeeeeeeeeeeeee : E6 E7 E8 -- E9 E : E8 SecA :TTSEEEEEE ExBuA:eebebebebe 119:ALMKGTLTLK:128 * 109:FGKGTRVTVE:118 SecB :EB EEEEEE ExBuB:ebeebebebe :10 E11 // >21 1jer- [b.6.1] "CUCUMBER STELLACYANIN" #Naa 110 start 2 end 106 SqID 11 % crms 4.1 Ssse 845 Sdis 38397 Rdis 25.7 Z 7.02 : E1 ---- - -E2 E3 H1 E4 - SecA :TTEEEE----EB T-TS BS S-EEEE TT SEEEEEEE SS HHHH B EEE-ETT ExBuA:eeeeeb----ebeb-eeebeee-ebebeeebeebbbebebeeeeeeeebbbbbbbb-bee 2:ECSVDI----QGND-QMQFNTN-AITVDKSCKQFTVNLSHPGNLPKNVMGHNWVLS-TAA:54 * ** * 2:STVHIVGDNTGWSVPSSPNFYSQWAAGKTFRVGDSLQFNFPA------NAHNVHEMETKQ:55 SecB : EEETTGGG SS SSTTHHHHHHHT EETT EEEE T------TT EEES HH ExBuB:eeebebbeeebbeebeeeeebeebbeeeebeebbbbebebee------eebbbeebeeee : E1 H1 E2 E3 ------ E4 H2 : H2 - E5 E6 E7 SecA :THHHH-HHHHHHH GGGTTS TT TT SEE B TT EEEEEEEGGGS TT EEEE ExBuA:eeeeb-beebeeeeeeeebbeeebeebebebebbbeeeebebebebeebeeeeebbbbbb 55:DMQGV-VTDGMASGLDKDYLKPDDSRVIAHTKLIGSGEKDSVTFDVSKLKEGEQYMFFCT:113 * * * ** 56:SFDACNFVNSD-----NDV------------ERT---SpVIERLDEL-----GMHYFVCT:90 SecB :HHHHT TTS ----- ------------ ---S EEEE SS-----EEEEEE ExBuB:bbeebeeeeee-----eee------------eee---eebeeebeee-----eebbbbbb : ----- ------------ --- E5 -----E6 : - E8 SecA :STTTTTT-SEEEEEE ExBuA:beebeee-bebebebe 114:FPGHSAL-MKGTLTLK:128 * * 91:VGTHCSNGQKLSINVV:106 SecB :STTTGGGT EEEEEEE ExBuB:beeebeebbebebebe : E7 // >22 1nif- [b.6.1] "NITRITE REDUCTASE" #Naa 333 start 215 end 323 SqID 17 % crms 7.0 Ssse 900 Sdis 39270 Rdis 6.0 Z 6.71 : ----- ---E2 E3 H1 E4 H2 SecA : TTS BS----- S---EEEE TT SEEEEEEE SS HHHH B EEEETTTHHHHHH ExBuA:ebeeebe-----ee---ebebeeebeebbbebebeeeeeeeebbbbbbbbbeeeeeebbe 10:NDQMQFN-----TN---AITVDKSCKQFTVNLSHPGNLPKNVMGHNWVLSTAADMQGVVT:61 ** * * * * * * 215:PTHIVFNGAVGALTGDHALTAAVGE-RVLVVHSQAN------RDTRPHLIGGHGDYVWAT:267 SecB : SEEEETTBTTTTSGGG EEEETT -EEEEEEEESS------S B EEEET EEEEETT ExBuB:bbbbbbbbeeeebeeeebbebeeee-ebbbbbbbbe------eebebbbeebebbebbbe : E13 E14 -E15 ------ E16 E17 : E5 E6 E7 -- SecA :HHHHH GGGTTS TT TT SEE B TT EEEEEEEGGGS TT EEEE STTTTT-- ExBuA:ebeeeeeeeebbeeebeebebebebbbeeeebebebebeebeeeeebbbbbbbeebee-- 62:DGMASGLDKDYLKPDDSRVIAHTKLIGSGEKDSVTFDVSKLKEGEQYMFFCTFPGHSA--:119 * ** * ** * * 268:G-------KFRNPPDLDQE---TWLIPGGTAGAAFYT---FRQPGVYAYVNHNLIEAFEL:314 SecB : ------- TTS EEEES---S B TTEEEEEEEE--- S EEEEEEESSHHHHHTT ExBuB:b-------ebeeebeeeee---ebebeeebbbbbbbe---bebbeebbbbbeeeebbeee : ------- E18 --- E19 --- E20 H3 : E8 SecA :TSEEEEEE ExBuA:ebebebebe 120:LMKGTLTLK:128 * 315:GAAGHFKVT:323 SecB :S EEEEEEE ExBuB:bbbbebebe : E21 // >23 1aozA [b.6.1] "ASCORBATE OXIDASE (E.C.1.10.3.3)" #Naa 552 start 203 end 299 SqID 13 % crms 7.1 Ssse 841 Sdis 36051 Rdis 2.3 Z 6.37 : E2 E3 H1 E4 H2 SecA : SEEEE TT SEEEEEEE SS HHHH B EEEETTTHHHHHHHHHHH GGGTTS TT ExBuA:eeebebeeebeebbbebebeeeeeeeebbbbbbbbbeeeeeebbeebeeeeeeeebbeee 17:TNAITVDKSCKQFTVNLSHPGNLPKNVMGHNWVLSTAADMQGVVTDGMASGLDKDYLKPD:76 * * * 203:PYIFHVSPKK-TYRIRIASTTA----LAALNFAIGNH-----QLLVVEAD----GNYVQP:248 SecB : EEE TT -EEEEEEEE S----S EEEEEETT ----- EEEEEET----TEEEEE ExBuB:eeebebeeee-ebbbbbbbbbb----bbbbbbbbbeb-----ebbbbbbb----bbebee : E11 -E12 ---- E13 ----- E14 ---- E15 : E5 E6 E7 --- E8 SecA : TT SEE B TT EEEEEEEGGGS TT EEEE ST---TTTTTSEEEEEE ExBuA:beebebebebbbeeeebebebebeebeeeeebbbbbbbe---ebeeebebebebe 77:DSRVIAHTKLIGSGEKDSVTFDVSKLKEGEQYMFFCTFP---GHSALMKGTLTLK:128 * *** ** * * * 249:FYTS--DI-DIYSGESYSVLITTD-QNPSENYWVSVGTRARHPNTPPGLTLLNYL:299 SecB :EEES-- E-EE TT EEEEEEE -S TT EEEEEEEESS S EEEEEEET ExBuB:bebe--bb-bbbbbbbbbbbbebe-eeeeebbbbbbbbbbbeeebeebbbbbbbe : -- E-16 E17 - E18 E19 // >24 1gff2 [b.10.1] "BACTERIOPHAGE G4 CAPSID PROTEINS GPF, GPG, GPJ" #Naa 177 start 53 end 149 SqID 10 % crms 5.5 Ssse 472 Sdis 33593 Rdis 13.1 Z 6.32 : E2 E3 H1 E4 --- H2 SecA :TTS BS SEEEE TT SEEEEEEE SS HHHH B EEEET---TTHHHHHHHHHHH ExBuA:beeebeeeebebeeebeebbbebebeeeeeeeebbbbbbbbbe---eeeeebbeebeeee 11:DQMQFNTNAITVDKSCKQFTVNLSHPGNLPKNVMGHNWVLSTA---ADMQGVVTDGMASG:67 * * * 53:HSGLCHVVRIDETNPTNHHALSIAGSLSNVPADMIAFAIRFEVADGVVPTAV--------:104 SecB :S EEEEEEE S SEEEEEEEEEESS TT EEEEEEEEEETT SB -------- ExBuB:ebbbbbbbebeeeeeeeebebbbbbebeebeeebebbbbbbebeeeeebeeb-------- : E5 E6 E7 -------- : E5 ----- E6 E7 SecA :GGGTTS TT TT SEE B -----TT EEEEEEEGGGS TT EEEE STT ExBuA:eeeebbeeebeebebebebbb-----eeeebebebebeebeeeeebbbbbbbee 68:LDKDYLKPDDSRVIAHTKLIG-----SGEKDSVTFDVSKLKEGEQYMFFCTFPG:116 ** ** * * :---------PALYDVYPIETFNNGKAISFKDAVTIDSHPRTVGNDVYAGIMLWS:149 SecB :--------- S EEE EEE SS EEE EEEEEE S SSTTEEEEEEEEEE ExBuB:---------eeeeeebebeeeeeeeebebebebebbbeeeeeebbbbbbbbbeb :--------- E8 E9 E10 E11 E12 // >25 1ten- [b.1.2] "TENASCIN (THIRD FIBRONECTIN TYPE III REPEAT)" #Naa 89 start 803 end 891 SqID 13 % crms 4.1 Ssse 433 Sdis 31630 Rdis 24.4 Z 6.04 : E2 E3 H1 E4 H2 SecA :TTS BS SEEEE TT SEEEEEEE SS HHHH B EEEETTTHHHHHHHHHHH GGG ExBuA:beeebeeeebebeeebeebbbebebeeeeeeeebbbbbbbbbeeeeeebbeebeeeeeee 11:DQMQFNTNAITVDKSCKQFTVNLSHPGNLPKNVMGHNWVLSTAADMQGVVTDGMASGLDK:70 * * * 803:LDAPSQIEVKDVTD--TTALITWFKPL-AEI--DGIELTYGIKDV---------------:842 SecB : EEEEEES S--S EEEEEE S-S --SEEEEEEEETT --------------- ExBuB:eeebeebeeeeeee--eebbbbbeebe-eeb--ebbebbbbeeee--------------- : E1 -- E2 - -- E3 --------------- : E5 E6 E7 --- E8 SecA :TTS TT TT SEE B TT EEEEEEEGGGS TT EEEE ST---TTTTTSEEEEEE ExBuA:ebbeeebeebebebebbbeeeebebebebeebeeeeebbbbbbbe---ebeeebebebeb 71:DYLKPDDSRVIAHTKLIGSGEKDSVTFDVSKLKEGEQYMFFCTFP---GHSALMKGTLTL:127 * ** * * * * * :------PGDR-TTIDLTE--DENQYSIGN--LKPDTEYEVSLISRRGDMSSNPAKETFTT:891 SecB :------TT -EEEEEET--T EEEE S-- TT EEEEEEEEEETTEE EEEEEE ExBuB:------eeee-eeeebee--eeeeeebee--beeebebbbbbebeeeeeebeeeeeebeb :------ -E4 -- E5 -- E6 E7 E8 //
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