(pdbjpw1) Matras : Protein 3D Structure Comparison


Protein 3D Structure Comparison

MATRAS : MArkovian TRAnsition of Structure evolution

Pairwise 3D Alignment

 Calculation of a structural alignment for two chains

Multiple 3D Alignment

 Calculation of multiple structural alignment for 3-10 chains

3D Library Search

 Comparison of one structure vs library structures. The library is weekly updated.

Sequence Search vs PDB

 Comparison of amino acid sequence vs library 3D structures. Simple 3D structure prediciton.

Download Source

 Download the source of the Matras program

Help page

REFERENCE
Kawabata T. "MATRAS: a program for protein 3D structure comparison" (2003). Nucleic Acids Res. Vol 31, 3367-9. [MEDLINE]

Kawabata T., Nishikawa.K. "Protein tertiary structure comparison using the Markov transition model of evolution" (2000). Proteins, vol 41, 108-122 [MEDLINE]

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LINKS TO RELATED PAGES

Lab.for Protein Databases,IPR,Osaka University

LastModified: 2025/03/22