Pairwise 3D Alignment	Calculation of a structural alignment for two chains
	Multiple 3D Alignment	Calculation of multiple structural alignment for 3-10 chains

• Kawabata, T., & Nishikawa, K. (2000). Protein structure comparison using the markov transition model of evolution. Proteins, 41(1), 108–122. [MEDLINE]
• Kawabata T. (2003). MATRAS: A program for protein 3D structure comparison. Nucleic acids research, 31(13), 3367–3369. https://doi.org/10.1093/nar/gkg581. [MEDLINE]
• Kawabata, T., & Kinoshita, K. (2025). Assessing Structural Classification Using AlphaFold2 Models Through ECOD-Based Comparative Analysis. Proteins, 10.1002/prot.26828. Advance online publication. https://doi.org/10.1002/prot.26828 [MEDLINE]

Comments and Questions to :

LastModified: 2025/04/21