Pairwise fitting pdb-3j0f on emdb-6814 by gmfit










Pairwise fitting of target pdb-3j0f on reference emdb-6814 by gmfit(PID:32478).





RANK[1] Corr.Coeff:0.092

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-3j0f)

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b'SINDBIS VIRION                                                        ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-3j0f)]







REFERENCE(emdb-6814)

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The CryoEM map of HPV59 VLP in complex with the Fab fragment of antibody 28F10 [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.092
0.000
0.000
0.000
0.000
0.000
0.000
0.000
0.000
0.000







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_6814.map.gz", and read it.

  2.  Download the Target molecule "3j0f"(PDB-format) or
  "3j0f"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.185614,-0.731535,-0.656052 178.832776 center 0,0,0 model #1
move 317.999102,261.884513,629.530329 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(emdb 6814)]

[Download the target GMM(pdb 3j0f)]

[Download gmfit result file(32478)]