Pairwise fitting pdb-3izd on pdb-1ucu by gmfit










Pairwise fitting of target pdb-3izd on reference pdb-1ucu by gmfit(PID:270171).





RANK[1] Corr.Coeff:0.464

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-3izd)

display:



color:



b'MODEL OF THE LARGE SUBUNIT RNA EXPANSION SEGMENT ES27L-OUT BASED ON A ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-3izd)]







REFERENCE(pdb-1ucu)

display:



color:


b'R-TYPE STRAIGHT FLAGELLAR FILAMENT MADE OF FULL-LENGTH FLAGELLIN      ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.464
0.360
0.242
0.229
0.194
0.159
0.124
0.118
0.088
0.071







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "1ucu"(PDB-format) or 
 "1ucu"(mmCIF-format), and read it.

  2.  Download the Target molecule "3izd"(PDB-format) or
  "3izd"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.034612,-0.949970,0.310417 164.815196 center 0,0,0 model #1
move 151.634275,-56.817983,34.408190 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!