Pairwise fitting pdb-1k4r on pdb-6b0x by gmfit










Pairwise fitting of target pdb-1k4r on reference pdb-6b0x by gmfit(PID:1239006).





RANK[1] Corr.Coeff:0.482

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-1k4r)

display:



color:



b'STRUCTURE OF DENGUE VIRUS                                             ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-1k4r)]







REFERENCE(pdb-6b0x)

display:



color:


b'CAPSID PROTEIN AND C-TERMINAL PART OF SCAFFOLDING PROTEIN IN THE      ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.482
0.450
0.430
0.426
0.423
0.378
0.352
0.351
0.263
0.260







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "6b0x"(PDB-format) or 
 "6b0x"(mmCIF-format), and read it.

  2.  Download the Target molecule "1k4r"(PDB-format) or
  "1k4r"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.286133,-0.121293,0.950482 136.737586 center 0,0,0 model #1
move 276.914067,310.949759,20.685653 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!