Pairwise fitting pdb-1k4r on pdb-1p58 by gmfit










Pairwise fitting of target pdb-1k4r on reference pdb-1p58 by gmfit(PID:4104691).





RANK[1] Corr.Coeff:0.761

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-1k4r)

display:



color:



b'STRUCTURE OF DENGUE VIRUS                                             ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-1k4r)]







REFERENCE(pdb-1p58)

display:



color:


b'COMPLEX ORGANIZATION OF DENGUE VIRUS MEMBRANE PROTEINS AS REVEALED BY ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
rank
1
2
3
4
5
6
7
8
9
10




Corr.Coeff.
0.761
0.470
0.426
0.410
0.402
0.399
0.386
0.298
0.273
0.248







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "1p58"(PDB-format) or 
 "1p58"(mmCIF-format), and read it.

  2.  Download the Target molecule "1k4r"(PDB-format) or
  "1k4r"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.666963,-0.230793,0.708446 3.329546 center 0,0,0 model #1
move -1.895603,10.286133,-12.376615 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(pdb 1p58)]

[Download the target GMM(pdb 1k4r)]

[Download gmfit result file(4104691)]