Pairwise fitting pdb-1k4r on pdb-1p58 by gmfit



Pairwise fitting of target pdb-1k4r on reference pdb-1p58 by gmfit(PID:4125156).

RANK[1] Corr.Coeff:0.761 [JSmol] [Molmil]
TARGET(pdb-1k4r)
display:
color:
b'STRUCTURE OF DENGUE VIRUS ' [Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-1k4r)]
REFERENCE(pdb-1p58)
display:
color:
b'COMPLEX ORGANIZATION OF DENGUE VIRUS MEMBRANE PROTEINS AS REVEALED BY ' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.761 0.470 0.426 0.410 0.402 0.399 0.386 0.298 0.273 0.248

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "1p58"(PDB-format) or "1p58"(mmCIF-format), and read it.
  2. Download the Target molecule "1k4r"(PDB-format) or "1k4r"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.666963,-0.230793,0.708446 3.329546 center 0,0,0 model #1
    move -1.895603,10.286133,-12.376615 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(pdb 1p58)] [Download the target GMM(pdb 1k4r)] [Download gmfit result file(4125156)]