Pairwise fitting pdb-1k4r on emdb-6034 by gmfit



Pairwise fitting of target pdb-1k4r on reference emdb-6034 by gmfit(PID:4146982).

RANK[1] Corr.Coeff:0.007 [JSmol] [Molmil]
TARGET(pdb-1k4r)
display:
color:
b'STRUCTURE OF DENGUE VIRUS ' [Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-1k4r)]
REFERENCE(emdb-6034)
display:
color:
Capsid Expansion Mechanism Of Bacteriophage T7 Revealed By Multi-State Atomic Models Derived From Cryo-EM Reconstructions [Ngauss:20]
[Download the reference map]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.007 0.007 0.007 0.007 0.007 0.007 0.007 0.007 0.007 0.007

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference map "emd_6034.map.gz", and read it.
  2. Download the Target molecule "1k4r"(PDB-format) or "1k4r"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn -0.647622,0.571873,0.503534 138.459962 center 0,0,0 model #1
    move 14.521658,-207.457950,95.614993 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(emdb 6034)] [Download the target GMM(pdb 1k4r)] [Download gmfit result file(4146982)]