Pairwise fitting pdb-1k4r on emdb-6034 by gmfit










Pairwise fitting of target pdb-1k4r on reference emdb-6034 by gmfit(PID:4146982).





RANK[1] Corr.Coeff:0.007

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-1k4r)

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b'STRUCTURE OF DENGUE VIRUS                                             ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-1k4r)]







REFERENCE(emdb-6034)

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Capsid Expansion Mechanism Of Bacteriophage T7 Revealed By Multi-State Atomic Models Derived From Cryo-EM Reconstructions [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.007
0.007
0.007
0.007
0.007
0.007
0.007
0.007
0.007
0.007







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_6034.map.gz", and read it.

  2.  Download the Target molecule "1k4r"(PDB-format) or
  "1k4r"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.647622,0.571873,0.503534 138.459962 center 0,0,0 model #1
move 14.521658,-207.457950,95.614993 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(emdb 6034)]

[Download the target GMM(pdb 1k4r)]

[Download gmfit result file(4146982)]