Pairwise fitting emdb-5372 on pdb-3jd7 by gmfit










Pairwise fitting of target emdb-5372 on reference pdb-3jd7 by gmfit(PID:553794).





RANK[1] Corr.Coeff:0.106

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-5372)

display:



color:



Structural transitions in RCNMV revealing potential mechanism of RNA release (EGTA map) [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-5372)]







REFERENCE(pdb-3jd7)

display:



color:


b'THE NOVEL ASYMMETRIC ENTRY INTERMEDIATE OF A PICORNAVIRUS CAPTURED    ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.106
0.044
0.026
0.018
0.013
0.013
0.010
0.009
0.008
0.007







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "3jd7"(PDB-format) or 
 "3jd7"(mmCIF-format), and read it.

  2.  Download the Target map "emd_5372.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.031196,-0.285143,-0.957977 131.884333 center 0,0,0 model #1
move -85.358133,-51.627967,115.142674 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!