Pairwise fitting emdb-5111 on pdb-3jbc by gmfit










Pairwise fitting of target emdb-5111 on reference pdb-3jbc by gmfit(PID:635543).





RANK[1] Corr.Coeff:0.139

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-5111)

display:



color:



Feline panleukopenia virus in complex with FAb from neutralizing antibody MAb E [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-5111)]







REFERENCE(pdb-3jbc)

display:



color:


b'COMPLEX OF POLIOVIRUS WITH VHH PVSP29F                                ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.139
0.110
0.108
0.051
0.027
0.020
0.011
0.001
0.001
0.000







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "3jbc"(PDB-format) or 
 "3jbc"(mmCIF-format), and read it.

  2.  Download the Target map "emd_5111.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.933071,-0.126891,0.336567 141.656306 center 0,0,0 model #1
move 84.691147,25.036208,34.152232 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!