Pairwise fitting emdb-5023 on emdb-3671 by gmfit



Pairwise fitting of target emdb-5023 on reference emdb-3671 by gmfit(PID:4094964).

RANK[1] Corr.Coeff:0.501 [JSmol] [Molmil]
TARGET(emdb-5023)
display:
color:
Molecular Structure of the Native HIV-1 gp120 trimer bound to CD4 and 17b: Membrane region [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-5023)]
REFERENCE(emdb-3671)
display:
color:
Open dimer of human ATM (Ataxia telangiectasia mutated) [Ngauss:20]
[Download the reference map]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.501 0.492 0.490 0.487 0.482 0.462 0.445 0.443 0.312 0.291

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference map "emd_3671.map.gz", and read it.
  2. Download the Target map "emd_5023.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.917411,-0.310148,0.249328 102.779025 center 0,0,0 model #1
    move 170.631015,347.328600,-57.548694 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(emdb 3671)] [Download the target GMM(emdb 5023)] [Download gmfit result file(4094964)]