Pairwise fitting emdb-5023 on emdb-3671 by gmfit










Pairwise fitting of target emdb-5023 on reference emdb-3671 by gmfit(PID:4161604).





RANK[1] Corr.Coeff:0.501

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-5023)

display:



color:



Molecular Structure of the Native HIV-1 gp120 trimer bound to CD4 and 17b: Membrane region [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-5023)]







REFERENCE(emdb-3671)

display:



color:


Open dimer of human ATM (Ataxia telangiectasia mutated) [Ngauss:20]



[Download the reference map]





Other Transformations
rank
1
2
3
4
5
6
7
8
9
10




Corr.Coeff.
0.501
0.492
0.490
0.487
0.482
0.462
0.445
0.443
0.312
0.291







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_3671.map.gz", and read it.

  2.  Download the Target map "emd_5023.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.917411,-0.310148,0.249328 102.779025 center 0,0,0 model #1
move 170.631015,347.328600,-57.548694 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(emdb 3671)]

[Download the target GMM(emdb 5023)]

[Download gmfit result file(4161604)]