Pairwise fitting emdb-1975 on pdb-5vgz by gmfit










Pairwise fitting of target emdb-1975 on reference pdb-5vgz by gmfit(PID:668981).





RANK[1] Corr.Coeff:0.523

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1975)

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Functional reconstitution of the 13-subunit human translation initiation factor eIF3. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1975)]







REFERENCE(pdb-5vgz)

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color:


 [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.523
0.519
0.490
0.481
0.477
0.473
0.445
0.429
0.427
0.417







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "5vgz"(PDB-format) or 
 "5vgz"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1975.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.928547,0.127878,-0.348495 179.552505 center 0,0,0 model #1
move -133.701829,419.030538,190.176016 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!