Pairwise fitting emdb-1908 on pdb-5a42 by gmfit










Pairwise fitting of target emdb-1908 on reference pdb-5a42 by gmfit(PID:181176).





RANK[1] Corr.Coeff:0.644

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1908)

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Unique structure of iC3b by 3D-Electron Microscopy [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1908)]







REFERENCE(pdb-5a42)

display:



color:


b'CRYO-EM SINGLE PARTICLE 3D RECONSTRUCTION OF THE NATIVE CONFORMATION  ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.644
0.619
0.605
0.496
0.445
0.443
0.421
0.399
0.396
0.375







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "5a42"(PDB-format) or 
 "5a42"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1908.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.939373,-0.275307,0.204413 153.021523 center 0,0,0 model #1
move 79.559108,136.143533,346.435870 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(pdb 5a42)]

[Download the target GMM(emdb 1908)]

[Download gmfit result file(181176)]